Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94055 | Sorghum | nucleus | 71.47 | 73.06 |
| Zm00001d013983_P001 | Maize | cytosol | 70.92 | 72.7 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 69.57 | 71.31 |
| Zm00001d032656_P001 | Maize | nucleus | 69.02 | 70.75 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 68.48 | 70.59 |
| HORVU1Hr1G042690.2 | Barley | plastid | 65.22 | 54.79 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 42.39 | 47.71 |
| GSMUA_Achr11P... | Banana | nucleus | 43.75 | 45.35 |
| PGSC0003DMT400027432 | Potato | cytosol | 40.76 | 45.18 |
| GSMUA_Achr11P... | Banana | nucleus | 43.48 | 44.2 |
| Solyc11g039960.1.1 | Tomato | nucleus | 38.86 | 41.81 |
| PGSC0003DMT400050883 | Potato | nucleus | 38.59 | 41.64 |
| Solyc02g014090.2.1 | Tomato | nucleus | 39.95 | 40.95 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 25.27 | 40.43 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 39.95 | 40.05 |
| KRG89129 | Soybean | nucleus | 36.14 | 37.57 |
| KRH38892 | Soybean | cytosol | 35.6 | 37.54 |
| AT5G23130.1 | Thale cress | nucleus | 40.49 | 37.53 |
| CDY20605 | Canola | nucleus | 29.62 | 37.46 |
| KRH40869 | Soybean | nucleus | 36.14 | 37.25 |
| KRH09395 | Soybean | nucleus | 35.6 | 37.01 |
| CDX78327 | Canola | nucleus | 37.23 | 36.53 |
| Bra005977.1-P | Field mustard | nucleus | 38.86 | 35.57 |
| CDY02209 | Canola | cytosol | 37.5 | 35.29 |
| CDX81087 | Canola | nucleus | 36.14 | 35.28 |
| Bra013019.1-P | Field mustard | cytosol | 37.23 | 35.13 |
| CDY21521 | Canola | nucleus | 39.67 | 34.93 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 37.77 | 34.92 |
| CDY61916 | Canola | cytosol | 38.04 | 34.74 |
| Bra008537.1-P | Field mustard | nucleus | 23.1 | 34.69 |
| Os06t0729900-00 | Rice | nucleus | 30.71 | 34.45 |
| AT5G08200.1 | Thale cress | nucleus | 38.04 | 34.23 |
| CDX69966 | Canola | nucleus | 38.86 | 34.05 |
| Bra009329.1-P | Field mustard | nucleus | 38.59 | 33.97 |
| CDY40759 | Canola | nucleus | 34.51 | 33.78 |
| Bra028667.1-P | Field mustard | nucleus | 34.51 | 33.78 |
| KRH29144 | Soybean | nucleus | 23.64 | 33.21 |
| CDY44762 | Canola | nucleus | 35.33 | 30.3 |
Protein Annotations
| Gene3D:3.10.350.10 | MapMan:35.2 | EntrezGene:4348943 | ProteinID:AAL59043.1 | ProteinID:AAP54345.1 | ProteinID:BAF26811.1 |
| ProteinID:BAT11378.1 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | EnsemblPlantsGene:Os10g0485500 |
| EnsemblPlants:Os10t0485500-01 | PFAM:PF01476 | PFscan:PS51782 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | UniProt:Q7XD97 |
| SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI000009E92F | RefSeq:XP_015612903.1 | SEG:seg | : |
Description
Peptidoglycan-binding Lysin subgroup domain containing protein. (Os10t0485500-01)
Coordinates
chr10:+:18357342..18359911
Molecular Weight (calculated)
40134.2 Da
IEP (calculated)
7.780
GRAVY (calculated)
-0.635
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPHLPKDD HAFANGFLFD GVARRPGEIE EAAAFAAAAD VAITIAAEQS GSPSSSTAPP MSSCGQYMLH RVGKLDTLAG IAIKYGVEVA DIKRLNGLST
101: DLQMFAHKTL RIPLPGRHPP STYQQNGSYE GDDRECTPPR RLHDDILDSV LRTPKHKASP AMSLLQGYYG LTPPPKKDTT HEGTEMAVYR KGKSVFLDDD
201: PWFGEPPDSD PFPFQHRKTR SLAIGSSLLN GETEENGDSE KLIRRRQKAD GELLPREENG SSAVLARAGK GLALRPKSGS RQDLNKSQQN LIALAEPSFG
301: DGLHAVRKSS STPEFQEPES NSSSTSSSIW STSKWTLKPD AFTLPLPLPL FDNIPKPIAA WRNKAARD
101: DLQMFAHKTL RIPLPGRHPP STYQQNGSYE GDDRECTPPR RLHDDILDSV LRTPKHKASP AMSLLQGYYG LTPPPKKDTT HEGTEMAVYR KGKSVFLDDD
201: PWFGEPPDSD PFPFQHRKTR SLAIGSSLLN GETEENGDSE KLIRRRQKAD GELLPREENG SSAVLARAGK GLALRPKSGS RQDLNKSQQN LIALAEPSFG
301: DGLHAVRKSS STPEFQEPES NSSSTSSSIW STSKWTLKPD AFTLPLPLPL FDNIPKPIAA WRNKAARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.