Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013019.1-P | Field mustard | cytosol | 93.06 | 58.46 |
| AT5G23130.1 | Thale cress | nucleus | 67.35 | 41.56 |
| Bra005977.1-P | Field mustard | nucleus | 60.41 | 36.82 |
| Bra009329.1-P | Field mustard | nucleus | 59.59 | 34.93 |
| Bra028667.1-P | Field mustard | nucleus | 50.2 | 32.71 |
| PGSC0003DMT400027432 | Potato | cytosol | 43.67 | 32.23 |
| PGSC0003DMT400050883 | Potato | nucleus | 42.04 | 30.21 |
| Solyc11g039960.1.1 | Tomato | nucleus | 41.63 | 29.82 |
| Solyc02g014090.2.1 | Tomato | nucleus | 43.27 | 29.53 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 37.14 | 27.83 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 44.49 | 27.39 |
| GSMUA_Achr11P... | Banana | nucleus | 39.18 | 26.52 |
| GSMUA_Achr11P... | Banana | nucleus | 37.55 | 25.92 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 35.92 | 23.98 |
| Os10t0485500-01 | Rice | cytosol | 34.69 | 23.1 |
| EER94055 | Sorghum | nucleus | 33.06 | 22.5 |
| Zm00001d032656_P001 | Maize | nucleus | 32.65 | 22.28 |
| Zm00001d013983_P001 | Maize | cytosol | 32.24 | 22.01 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 32.24 | 22.01 |
| EER95660 | Sorghum | nucleus | 31.43 | 22.0 |
| TraesCSU01G126200.1 | Wheat | cytosol | 31.02 | 21.9 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 28.98 | 21.71 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 31.02 | 21.59 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 31.43 | 21.57 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 30.2 | 21.51 |
| Os06t0729900-00 | Rice | nucleus | 26.94 | 20.12 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 26.94 | 20.12 |
| Zm00001d048521_P001 | Maize | nucleus | 29.8 | 19.78 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 26.53 | 19.52 |
| KRH29144 | Soybean | nucleus | 20.82 | 19.47 |
| EER89011 | Sorghum | nucleus | 26.94 | 19.41 |
| Zm00001d027325_P002 | Maize | cytosol | 23.67 | 19.33 |
| Zm00001d036338_P001 | Maize | nucleus | 23.67 | 18.59 |
| HORVU1Hr1G042690.2 | Barley | plastid | 31.84 | 17.81 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 26.94 | 17.23 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 16.73 | 15.47 |
Protein Annotations
Description
AT5G23130 (E=4e-062) | peptidoglycan-binding LysM domain-containing protein
Coordinates
chrA02:-:16293052..16293789
Molecular Weight (calculated)
26684.2 Da
IEP (calculated)
10.016
GRAVY (calculated)
-0.728
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDTCREDCS EPAASSSASN GNLQDVFDPF QSLKLKPSET KISPAMDSLQ GYYGLKPTNE RASYPQEDNG HQYLTPTSTP LNQHRKSRSL VDAVIAEVNQ
101: SSYHQSKEVD SDKPTRRRQK SEADFSSRTP ELLLKKESRS SCGGFSAIAG KGLALRPKAV SKTNLSAPVP INAPVGDSFS SVRKSFSASV LQEPVSNNKG
201: SSSSLWQSSK WTLKADLLQQ AAMARSIFDG LPKPLTGRRN KKAMD
101: SSYHQSKEVD SDKPTRRRQK SEADFSSRTP ELLLKKESRS SCGGFSAIAG KGLALRPKAV SKTNLSAPVP INAPVGDSFS SVRKSFSASV LQEPVSNNKG
201: SSSSLWQSSK WTLKADLLQQ AAMARSIFDG LPKPLTGRRN KKAMD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.