Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G549400.1 | Wheat | nucleus | 89.6 | 89.33 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 85.63 | 84.08 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 84.71 | 72.32 |
| Os06t0729900-00 | Rice | nucleus | 58.72 | 58.54 |
| EER89011 | Sorghum | nucleus | 59.94 | 57.65 |
| Zm00001d036338_P001 | Maize | nucleus | 50.15 | 52.56 |
| PGSC0003DMT400027432 | Potato | cytosol | 35.17 | 34.64 |
| GSMUA_Achr11P... | Banana | nucleus | 37.0 | 34.08 |
| Solyc02g014090.2.1 | Tomato | nucleus | 36.39 | 33.15 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 32.72 | 32.72 |
| GSMUA_Achr11P... | Banana | nucleus | 35.17 | 31.77 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 35.17 | 31.34 |
| KRH38892 | Soybean | cytosol | 33.33 | 31.23 |
| CDY20605 | Canola | nucleus | 27.52 | 30.93 |
| PGSC0003DMT400050883 | Potato | nucleus | 32.11 | 30.79 |
| KRH09395 | Soybean | nucleus | 33.03 | 30.51 |
| Solyc11g039960.1.1 | Tomato | nucleus | 31.8 | 30.41 |
| CDY02209 | Canola | cytosol | 36.09 | 30.18 |
| CDX78327 | Canola | nucleus | 34.56 | 30.13 |
| Bra013019.1-P | Field mustard | cytosol | 35.78 | 30.0 |
| CDX81087 | Canola | nucleus | 33.95 | 29.44 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 35.78 | 29.4 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 31.8 | 29.13 |
| KRH40869 | Soybean | nucleus | 31.8 | 29.13 |
| Bra008537.1-P | Field mustard | nucleus | 21.71 | 28.98 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 20.18 | 28.7 |
| Bra005977.1-P | Field mustard | nucleus | 35.17 | 28.61 |
| AT5G23130.1 | Thale cress | nucleus | 34.56 | 28.46 |
| CDY40759 | Canola | nucleus | 32.72 | 28.46 |
| KRG89129 | Soybean | nucleus | 30.58 | 28.25 |
| Bra028667.1-P | Field mustard | nucleus | 32.42 | 28.19 |
| CDY61916 | Canola | cytosol | 34.56 | 28.04 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 29.05 | 27.62 |
| Bra009329.1-P | Field mustard | nucleus | 35.17 | 27.51 |
| CDY21521 | Canola | nucleus | 35.17 | 27.51 |
| AT5G08200.1 | Thale cress | nucleus | 34.25 | 27.38 |
| CDX69966 | Canola | nucleus | 35.17 | 27.38 |
| KRH29144 | Soybean | nucleus | 20.18 | 25.19 |
| CDY44762 | Canola | nucleus | 32.42 | 24.71 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G560400.1 | EnsemblPlantsGene:TraesCS7A01G560400 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF12 | PFAM:PF01476 | PFscan:PS51782 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | TIGR:cd00118 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7A:+:732087519..732089709
Molecular Weight (calculated)
34977.9 Da
IEP (calculated)
8.206
GRAVY (calculated)
-0.603
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISHPLSDE FYGGPRGGGL GSALLLSPER TPPPASCCSP VDDGQEDFLQ HQVSRMDTLA GIAIKYGVEI SDIKRANSLV TDSQMYAHKA LLIPLPGRPM
101: PSSVKLNGSS LRSKRAWAPN NQQNGDIVNS LDSDKSRQQQ SSLAMSSLQS YYGLSSQGGD DMDLSTEMSL YSKGSSQGIG SEILPISSSP PDSTQSTGRG
201: NGATKEKQDG SIRRRQKVEA DTQDDLLSDS IKMIKSFLPR PVSSMRLNTD AGSPDPAARS SGGSFLDGFK SVVRRSPSAP SFADSENNGV SMWSSSKWTF
301: NHESFTRPLL DGLPKPATGR RMKAALD
101: PSSVKLNGSS LRSKRAWAPN NQQNGDIVNS LDSDKSRQQQ SSLAMSSLQS YYGLSSQGGD DMDLSTEMSL YSKGSSQGIG SEILPISSSP PDSTQSTGRG
201: NGATKEKQDG SIRRRQKVEA DTQDDLLSDS IKMIKSFLPR PVSSMRLNTD AGSPDPAARS SGGSFLDGFK SVVRRSPSAP SFADSENNGV SMWSSSKWTF
301: NHESFTRPLL DGLPKPATGR RMKAALD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.