Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78327 | Canola | nucleus | 93.47 | 72.53 |
| CDX81087 | Canola | nucleus | 93.47 | 72.15 |
| Bra005977.1-P | Field mustard | nucleus | 91.75 | 66.42 |
| CDY21521 | Canola | nucleus | 82.13 | 57.18 |
| AT5G08200.1 | Thale cress | nucleus | 78.35 | 55.75 |
| CDX69966 | Canola | nucleus | 80.07 | 55.48 |
| CDY40759 | Canola | nucleus | 66.67 | 51.6 |
| CDY44762 | Canola | nucleus | 69.07 | 46.85 |
| CDY02209 | Canola | cytosol | 60.14 | 44.76 |
| CDY61916 | Canola | cytosol | 60.48 | 43.67 |
| PGSC0003DMT400027432 | Potato | cytosol | 49.48 | 43.37 |
| PGSC0003DMT400050883 | Potato | nucleus | 47.77 | 40.76 |
| Solyc11g039960.1.1 | Tomato | nucleus | 47.42 | 40.35 |
| Solyc02g014090.2.1 | Tomato | nucleus | 49.14 | 39.83 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 50.52 | 36.93 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 40.21 | 35.78 |
| GSMUA_Achr11P... | Banana | nucleus | 40.89 | 33.52 |
| GSMUA_Achr11P... | Banana | nucleus | 40.89 | 32.87 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 40.55 | 32.15 |
| KRH29144 | Soybean | nucleus | 27.84 | 30.92 |
| Os10t0485500-01 | Rice | cytosol | 37.46 | 29.62 |
| Zm00001d032656_P001 | Maize | nucleus | 35.74 | 28.97 |
| EER94055 | Sorghum | nucleus | 35.4 | 28.61 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 35.05 | 28.57 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 34.71 | 28.13 |
| Zm00001d027325_P002 | Maize | cytosol | 28.87 | 28.0 |
| Zm00001d013983_P001 | Maize | cytosol | 34.02 | 27.58 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 33.33 | 27.56 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 30.93 | 27.52 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 32.3 | 27.33 |
| TraesCSU01G126200.1 | Wheat | cytosol | 32.3 | 27.09 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 29.9 | 26.52 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 29.55 | 25.83 |
| EER95660 | Sorghum | nucleus | 30.58 | 25.43 |
| Zm00001d048521_P001 | Maize | nucleus | 31.96 | 25.2 |
| Os06t0729900-00 | Rice | nucleus | 28.18 | 25.0 |
| EER89011 | Sorghum | nucleus | 27.84 | 23.82 |
| Zm00001d036338_P001 | Maize | nucleus | 25.43 | 23.72 |
| HORVU1Hr1G042690.2 | Barley | plastid | 35.05 | 23.29 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 20.62 | 22.64 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 29.21 | 22.19 |
Protein Annotations
| EnsemblPlants:CDY20605 | EnsemblPlantsGene:GSBRNA2T00012777001 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | ProteinID:CDY20605 | ProteinID:CDY20605.1 |
| SEG:seg | UniParc:UPI0004EDC16C | UniProt:A0A078G256 | MapMan:35.2 | : | : |
Description
BnaC08g14530DBnaC08g14530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G256]
Coordinates
chrLK032110:+:185500..187053
Molecular Weight (calculated)
31133.8 Da
IEP (calculated)
9.490
GRAVY (calculated)
-0.440
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQVADVKKM NGLVTDLQMF ALKSLQIPLP GRHPPSPCLS NGSLNHGYFF ILVKNGCSCH ELEPPNHSNG DVFDSFQSLR LKSSEKKVSP AMNSLQGCYG
101: LKPANRTVSV GGSLEMGNYK SLVNALLEEI NQSPDNTTHQ DSSSDKLIRG RRKSGADFSS RTPELLLKEE NGSSNGGFLS IAGKGLALRS KASSRTNLSA
201: AESETTSNFN PVPINLMDAS VSDSFSSVRK SSSASSLQDP DGSNGSSSLS LWPTSKWRLK PDLLTPAAIT SSIFDGLPKP LTGRRNKAAM D
101: LKPANRTVSV GGSLEMGNYK SLVNALLEEI NQSPDNTTHQ DSSSDKLIRG RRKSGADFSS RTPELLLKEE NGSSNGGFLS IAGKGLALRS KASSRTNLSA
201: AESETTSNFN PVPINLMDAS VSDSFSSVRK SSSASSLQDP DGSNGSSSLS LWPTSKWRLK PDLLTPAAIT SSIFDGLPKP LTGRRNKAAM D
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.