Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94055 | Sorghum | nucleus | 93.04 | 92.78 |
| Zm00001d032656_P001 | Maize | nucleus | 87.19 | 87.19 |
| Os10t0485500-01 | Rice | cytosol | 72.7 | 70.92 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 68.8 | 68.8 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 67.13 | 67.51 |
| HORVU1Hr1G042690.2 | Barley | plastid | 63.23 | 51.83 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 43.18 | 47.4 |
| Zm00001d048521_P001 | Maize | nucleus | 44.29 | 43.09 |
| PGSC0003DMT400027432 | Potato | cytosol | 39.55 | 42.77 |
| Zm00001d027325_P002 | Maize | cytosol | 35.1 | 42.0 |
| GSMUA_Achr11P... | Banana | nucleus | 42.06 | 41.71 |
| GSMUA_Achr11P... | Banana | nucleus | 41.23 | 41.69 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 42.34 | 41.42 |
| Solyc02g014090.2.1 | Tomato | nucleus | 39.83 | 39.83 |
| Solyc11g039960.1.1 | Tomato | nucleus | 37.6 | 39.47 |
| PGSC0003DMT400050883 | Potato | nucleus | 37.33 | 39.3 |
| KRH38892 | Soybean | cytosol | 35.93 | 36.96 |
| KRH09395 | Soybean | nucleus | 36.21 | 36.72 |
| KRG89129 | Soybean | nucleus | 35.93 | 36.44 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 22.56 | 35.22 |
| AT5G23130.1 | Thale cress | nucleus | 38.44 | 34.76 |
| KRH40869 | Soybean | nucleus | 34.26 | 34.45 |
| Bra013019.1-P | Field mustard | cytosol | 37.33 | 34.36 |
| CDY20605 | Canola | nucleus | 27.58 | 34.02 |
| CDY02209 | Canola | cytosol | 37.05 | 34.02 |
| Bra005977.1-P | Field mustard | nucleus | 37.88 | 33.83 |
| CDX78327 | Canola | nucleus | 35.1 | 33.6 |
| CDX81087 | Canola | nucleus | 35.1 | 33.42 |
| CDY61916 | Canola | cytosol | 37.33 | 33.25 |
| Bra028667.1-P | Field mustard | nucleus | 34.82 | 33.24 |
| CDY40759 | Canola | nucleus | 34.54 | 32.98 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 36.49 | 32.91 |
| CDY21521 | Canola | nucleus | 38.16 | 32.78 |
| AT5G08200.1 | Thale cress | nucleus | 37.33 | 32.76 |
| CDX69966 | Canola | nucleus | 38.16 | 32.62 |
| Bra009329.1-P | Field mustard | nucleus | 37.88 | 32.54 |
| Zm00001d036338_P001 | Maize | nucleus | 28.13 | 32.37 |
| Bra008537.1-P | Field mustard | nucleus | 22.01 | 32.24 |
| KRH29144 | Soybean | nucleus | 22.28 | 30.53 |
| CDY44762 | Canola | nucleus | 34.54 | 28.9 |
Protein Annotations
| EnsemblPlants:Zm00001d013983_P001 | EnsemblPlants:Zm00001d013983_T001 | EnsemblPlantsGene:Zm00001d013983 | EntrezGene:100283704 | Gene3D:3.10.350.10 | InterPro:IPR018392 |
| InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 |
| PFscan:PS51782 | ProteinID:AQK64947.1 | SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI000220FFA1 |
| UniProt:A0A1D6GP29 | MapMan:35.2 | : | : | : | : |
Description
LysM domain containing protein
Coordinates
chr5:-:27294560..27298016
Molecular Weight (calculated)
39278.2 Da
IEP (calculated)
8.221
GRAVY (calculated)
-0.674
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRPHLPKDP AFPRTNGSLD GGARGLGEIE EVGAAATVAV EQSPSQSSSP SASSPAAAMS SCGQYMLHRV RKLDTLAGVA IKYGVEVADI KRLNGLSTDL
101: QMFAHKTLRI PLPGRHPPSS YQQNGSYESD DRECTPRRIH DDILESILKT PNSKVSPAMS LLQGYYGLEP PPKRDQTSEG TEMAVHSKGK SAFLDVEPWL
201: EPPNSDPFPL QNRKNRSLMI GSFLDGGTDE NGDSERFIRR RQKADGELLP REENGGDFLA SVGKGLALRP KSSNRPDMNK SQQNLFAMAE PLFGNGLQTV
301: RKSSSTPEFQ EPETNTSSSI WSASKWSINT DAFALPLPIP RFDNIPKPIA AWRNKPARD
101: QMFAHKTLRI PLPGRHPPSS YQQNGSYESD DRECTPRRIH DDILESILKT PNSKVSPAMS LLQGYYGLEP PPKRDQTSEG TEMAVHSKGK SAFLDVEPWL
201: EPPNSDPFPL QNRKNRSLMI GSFLDGGTDE NGDSERFIRR RQKADGELLP REENGGDFLA SVGKGLALRP KSSNRPDMNK SQQNLFAMAE PLFGNGLQTV
301: RKSSSTPEFQ EPETNTSSSI WSASKWSINT DAFALPLPIP RFDNIPKPIA AWRNKPARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.