Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028667.1-P | Field mustard | nucleus | 98.14 | 98.14 |
| CDY44762 | Canola | nucleus | 90.96 | 79.72 |
| CDY21521 | Canola | nucleus | 77.66 | 69.86 |
| CDX69966 | Canola | nucleus | 76.86 | 68.81 |
| CDX81087 | Canola | nucleus | 68.88 | 68.7 |
| CDX78327 | Canola | nucleus | 68.35 | 68.53 |
| AT5G08200.1 | Thale cress | nucleus | 74.2 | 68.22 |
| CDY20605 | Canola | nucleus | 51.6 | 66.67 |
| CDY61916 | Canola | cytosol | 57.18 | 53.35 |
| CDY02209 | Canola | cytosol | 53.72 | 51.66 |
| PGSC0003DMT400027432 | Potato | cytosol | 41.76 | 47.29 |
| Solyc11g039960.1.1 | Tomato | nucleus | 40.16 | 44.15 |
| Solyc02g014090.2.1 | Tomato | nucleus | 42.02 | 44.01 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.89 | 43.99 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 35.9 | 41.28 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 42.29 | 39.95 |
| GSMUA_Achr11P... | Banana | nucleus | 35.64 | 37.75 |
| GSMUA_Achr11P... | Banana | nucleus | 35.9 | 37.29 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 35.9 | 36.78 |
| KRH29144 | Soybean | nucleus | 25.53 | 36.64 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 33.78 | 35.57 |
| Zm00001d032656_P001 | Maize | nucleus | 33.78 | 35.38 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 33.78 | 35.38 |
| EER94055 | Sorghum | nucleus | 33.78 | 35.28 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 32.98 | 35.23 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 24.47 | 34.72 |
| TraesCSU01G126200.1 | Wheat | cytosol | 31.91 | 34.58 |
| Zm00001d013983_P001 | Maize | cytosol | 32.98 | 34.54 |
| Os10t0485500-01 | Rice | cytosol | 33.78 | 34.51 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 30.85 | 33.72 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 28.99 | 33.23 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 28.46 | 32.72 |
| Zm00001d027325_P002 | Maize | cytosol | 25.0 | 31.33 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 27.66 | 31.23 |
| EER95660 | Sorghum | nucleus | 28.72 | 30.86 |
| Os06t0729900-00 | Rice | nucleus | 26.6 | 30.49 |
| Zm00001d036338_P001 | Maize | nucleus | 25.0 | 30.13 |
| HORVU1Hr1G042690.2 | Barley | plastid | 34.31 | 29.45 |
| EER89011 | Sorghum | nucleus | 26.6 | 29.41 |
| Zm00001d048521_P001 | Maize | nucleus | 28.72 | 29.27 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 28.19 | 27.68 |
Protein Annotations
| EnsemblPlants:CDY40759 | EnsemblPlantsGene:GSBRNA2T00071656001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | ProteinID:CDY40759 | ProteinID:CDY40759.1 |
| SEG:seg | UniParc:UPI0004EE4CA3 | UniProt:A0A078HTU8 | MapMan:35.2 | : | : |
Description
BnaAnng06220DBnaAnng06220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTU8]
Coordinates
chrLK032478:-:135668..137496
Molecular Weight (calculated)
40907.8 Da
IEP (calculated)
10.034
GRAVY (calculated)
-0.754
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMDRRERRL SNRNGTPPEY TNGKFRDDKN GYGGGFFLDP SSPNILRIPS PTSSSPPPRS SSPDRGYIEH RVSKFDTLAG VAIKYGVEVG DVKKMNGLVT
101: DLQMFALKSL RIPLPGRHPP SPCLSIGSSH HGEGCSCHEL EPQNDTNSDA FDSFQSLRLK SSKKKGYYGL KPPIRTVSVG GSLEMGTYKK ESNGDSQYLR
201: PFPSTNTPLN HHRKSRSLVN ALLEEFNQSS QEPSSNKFMR RRQKSEADFT SRTPELMLKE ENTSSSNGGF LSSVGGKGLA LRSKASSRTS LSSAESETCS
301: FNPVPMNLMD APVSDSFASV RKSSSASSLQ DPDGNSNNGS SSLSLWSTST PAAITSSIFD GLPKPLTGRR NKTAMD
101: DLQMFALKSL RIPLPGRHPP SPCLSIGSSH HGEGCSCHEL EPQNDTNSDA FDSFQSLRLK SSKKKGYYGL KPPIRTVSVG GSLEMGTYKK ESNGDSQYLR
201: PFPSTNTPLN HHRKSRSLVN ALLEEFNQSS QEPSSNKFMR RRQKSEADFT SRTPELMLKE ENTSSSNGGF LSSVGGKGLA LRSKASSRTS LSSAESETCS
301: FNPVPMNLMD APVSDSFASV RKSSSASSLQ DPDGNSNNGS SSLSLWSTST PAAITSSIFD GLPKPLTGRR NKTAMD
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.