Factsheet for TraesCSU01G126200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G551300.1	Wheat	cytosol	87.9	88.66
TraesCS4B01G387000.1	Wheat	cytosol	85.01	83.81
HORVU4Hr1G089910.8	Barley	cytosol	52.45	68.68
EER95660	Sorghum	nucleus	60.52	60.0
Zm00001d027325_P002	Maize	cytosol	46.69	54.0
Zm00001d048521_P001	Maize	nucleus	56.2	52.85
PGSC0003DMT400027432	Potato	cytosol	38.62	40.36
GSMUA_Achr11P...	Banana	nucleus	40.92	40.0
GSMUA_Achr4P29860_001	Banana	nucleus	36.89	39.14
GSMUA_Achr11P...	Banana	nucleus	40.35	38.67
Solyc02g014090.2.1	Tomato	nucleus	39.19	37.88
GSMUA_Achr2P10710_001	Banana	nucleus	38.33	36.24
Solyc11g039960.1.1	Tomato	nucleus	35.16	35.67
PGSC0003DMT400050883	Potato	nucleus	34.87	35.48
KRH38892	Soybean	cytosol	35.16	34.96
KRH09395	Soybean	nucleus	34.87	34.18
KRH40869	Soybean	nucleus	34.87	33.89
KRG89129	Soybean	nucleus	34.29	33.62
VIT_01s0011g02130.t01	Wine grape	nucleus	37.18	32.41
CDY20605	Canola	nucleus	27.09	32.3
CDX78327	Canola	nucleus	34.87	32.27
VIT_17s0053g00210.t01	Wine grape	cytosol	21.33	32.17
CDY40759	Canola	nucleus	34.58	31.91
Bra028667.1-P	Field mustard	nucleus	34.58	31.91
CDX81087	Canola	nucleus	34.58	31.83
Bra005977.1-P	Field mustard	nucleus	36.6	31.59
CDY21521	Canola	nucleus	37.46	31.1
Bra008537.1-P	Field mustard	nucleus	21.9	31.02
Bra013019.1-P	Field mustard	cytosol	34.58	30.77
CDY02209	Canola	cytosol	34.58	30.69
Bra009329.1-P	Field mustard	nucleus	36.89	30.62
CDX69966	Canola	nucleus	36.89	30.48
AT5G08200.1	Thale cress	nucleus	35.73	30.32
AT5G23130.1	Thale cress	nucleus	33.72	29.47
CDY61916	Canola	cytosol	32.85	28.29
CDY44762	Canola	nucleus	34.01	27.51
KRH29144	Soybean	nucleus	20.46	27.1

Protein Annotations

EnsemblPlants:TraesCSU01G126200.1	EnsemblPlantsGene:TraesCSU01G126200	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom
InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF14	PFscan:PS51782	SEG:seg	SUPFAM:SSF54106
TIGR:cd00118	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:108845953..108848357

Molecular Weight (calculated)

37407.2 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.540

Length

347 amino acids

Sequence
(BLAST)

001: MGVHAAPFPF PLPRRQDEDD DADDTIVLGG GGGRWGAAAM AEDEAEQSPT PPPMSSCGRY ILHRVCRFDT LAGVAIKYGV EVADVKRVNG LTADLQMFAH
101: KTLRIPLPGR HPPAQHSPPS SSPAAAAAAR EWTTRRPPKN AALDPFQKPP RSTVSPSMSL LQGYYGLAPP PKRDLTDEGA EMGTAVRGQH RKARSISTGF
201: PGVNGDAGWE TDDAEKQIRR RQKADLELTT MREDNGGALL PRTGEGLALR PKSGSRPDMN SSQQDLVAAG FVPSYGDGLL AVRKSSSTPE FQDSDNNIAS
301: VWLSKWNLKP DAFAVPLPIL LLDSLPKPLF DSLPKPIAAW RNKAARD

Best Arabidopsis Sequence Match ( AT5G23130.1 )
(BLAST)

001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD

Arabidopsis Description

Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.