Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027432 | Potato | cytosol | 41.22 | 32.53 |
| Solyc02g014090.2.1 | Tomato | nucleus | 41.98 | 30.64 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.69 | 30.5 |
| Solyc11g039960.1.1 | Tomato | nucleus | 39.69 | 30.41 |
| KRG89129 | Soybean | nucleus | 40.46 | 29.94 |
| KRH40869 | Soybean | nucleus | 40.46 | 29.69 |
| CDY20605 | Canola | nucleus | 30.92 | 27.84 |
| CDX78327 | Canola | nucleus | 38.93 | 27.2 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 33.21 | 26.61 |
| CDX81087 | Canola | nucleus | 38.17 | 26.53 |
| AT5G23130.1 | Thale cress | nucleus | 40.08 | 26.45 |
| Bra005977.1-P | Field mustard | nucleus | 39.69 | 25.87 |
| GSMUA_Achr11P... | Banana | nucleus | 34.73 | 25.63 |
| Bra028667.1-P | Field mustard | nucleus | 36.64 | 25.53 |
| CDY40759 | Canola | nucleus | 36.64 | 25.53 |
| CDY21521 | Canola | nucleus | 40.46 | 25.36 |
| Bra009329.1-P | Field mustard | nucleus | 40.46 | 25.36 |
| CDX69966 | Canola | nucleus | 40.46 | 25.24 |
| AT5G08200.1 | Thale cress | nucleus | 38.93 | 24.94 |
| GSMUA_Achr11P... | Banana | nucleus | 34.35 | 24.86 |
| CDY61916 | Canola | cytosol | 38.17 | 24.81 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 34.73 | 24.8 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 24.81 | 24.53 |
| Bra013019.1-P | Field mustard | cytosol | 35.88 | 24.1 |
| KRH38892 | Soybean | cytosol | 32.06 | 24.07 |
| CDY02209 | Canola | cytosol | 35.88 | 24.04 |
| Os10t0485500-01 | Rice | cytosol | 33.21 | 23.64 |
| KRH09395 | Soybean | nucleus | 31.68 | 23.45 |
| EER94055 | Sorghum | nucleus | 31.68 | 23.06 |
| Zm00001d032656_P001 | Maize | nucleus | 30.92 | 22.56 |
| Zm00001d013983_P001 | Maize | cytosol | 30.53 | 22.28 |
| CDY44762 | Canola | nucleus | 35.5 | 21.68 |
| EER95660 | Sorghum | nucleus | 28.24 | 21.14 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 28.63 | 21.01 |
| Bra008537.1-P | Field mustard | nucleus | 19.47 | 20.82 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 25.95 | 20.73 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 27.1 | 20.64 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 28.24 | 20.61 |
| TraesCSU01G126200.1 | Wheat | cytosol | 27.1 | 20.46 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 25.19 | 20.18 |
| Os06t0729900-00 | Rice | nucleus | 25.19 | 20.12 |
| EER89011 | Sorghum | nucleus | 25.95 | 20.0 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 26.72 | 19.89 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 25.19 | 19.82 |
| Zm00001d027325_P002 | Maize | cytosol | 22.52 | 19.67 |
| Zm00001d036338_P001 | Maize | nucleus | 22.52 | 18.91 |
| Zm00001d048521_P001 | Maize | nucleus | 26.34 | 18.7 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 25.95 | 17.75 |
| HORVU1Hr1G042690.2 | Barley | plastid | 27.86 | 16.67 |
Protein Annotations
| EMBL:ACUP02006786 | EnsemblPlants:KRH29144 | EnsemblPlantsGene:GLYMA_11G100600 | EntrezGene:102666792 | Gene3D:3.10.350.10 | InterPro:IPR018392 |
| InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 |
| PFscan:PS51782 | ProteinID:KRH29144 | ProteinID:KRH29144.1 | SEG:seg | SUPFAM:SSF54106 | UniParc:UPI00023CCD94 |
| UniProt:I1LIS3 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:7621257..7623339
Molecular Weight (calculated)
29077.6 Da
IEP (calculated)
10.188
GRAVY (calculated)
-0.671
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIQTRSMYD YNHSQMMMSS SASSPPTLGY IQHPISKLDT LAGIAIKYGV EVADIKKMNG LVTDSQMFAL KSIGIPLNGK HPPPIITGYD DNTDNSPAAD
101: NAKSLRRKSS EQKLSPVMSC LRSHYGTKPT MKKSVSEIFS MVEYEKRASK CSENGSFYKK SPMSPQHHSH HKKSHSLANE TLDDIMEVVK ARRSDSDRSG
201: TLIRRSYKSE ANLQRIPELL LKQDCNNSNG SFSFSARSAK GLAQRQKSGS RIALTAYSNH VV
101: NAKSLRRKSS EQKLSPVMSC LRSHYGTKPT MKKSVSEIFS MVEYEKRASK CSENGSFYKK SPMSPQHHSH HKKSHSLANE TLDDIMEVVK ARRSDSDRSG
201: TLIRRSYKSE ANLQRIPELL LKQDCNNSNG SFSFSARSAK GLAQRQKSGS RIALTAYSNH VV
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.