CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02209	Canola	cytosol	78.91	81.33
AT5G23130.1	Thale cress	nucleus	68.49	69.52
CDY20605	Canola	nucleus	43.67	60.48
CDX78327	Canola	nucleus	53.35	57.33
CDX81087	Canola	nucleus	53.6	57.29
CDY40759	Canola	nucleus	53.35	57.18
CDY21521	Canola	nucleus	59.06	56.94
CDX69966	Canola	nucleus	58.56	56.19
CDY44762	Canola	nucleus	54.34	51.05
PGSC0003DMT400027432	Potato	cytosol	39.7	48.19
Solyc02g014090.2.1	Tomato	nucleus	39.7	44.57
GSMUA_Achr4P29860_001	Banana	nucleus	35.73	44.04
Solyc11g039960.1.1	Tomato	nucleus	37.22	43.86
PGSC0003DMT400050883	Potato	nucleus	36.97	43.7
VIT_01s0011g02130.t01	Wine grape	nucleus	41.69	42.21
GSMUA_Achr11P...	Banana	nucleus	35.98	40.85
GSMUA_Achr2P10710_001	Banana	nucleus	35.98	39.51
GSMUA_Achr11P...	Banana	nucleus	35.24	39.23
KRH29144	Soybean	nucleus	24.81	38.17
Os10t0485500-01	Rice	cytosol	34.74	38.04
EER94055	Sorghum	nucleus	33.75	37.78
Zm00001d013983_P001	Maize	cytosol	33.25	37.33
Zm00001d032656_P001	Maize	nucleus	32.01	35.93
TraesCS1B01G177500.1	Wheat	nucleus	31.51	35.38
TraesCS1A01G160800.1	Wheat	nucleus	31.02	35.01
TraesCS7A01G560400.1	Wheat	nucleus	28.04	34.56
TraesCS7D01G549400.1	Wheat	nucleus	27.3	33.54
Zm00001d027325_P002	Maize	cytosol	24.81	33.33
TraesCSU01G126200.1	Wheat	cytosol	28.29	32.85
TraesCS5A01G551300.1	Wheat	cytosol	28.04	32.85
TraesCS4B01G387000.1	Wheat	cytosol	28.54	32.67
EER95660	Sorghum	nucleus	28.04	32.29
Zm00001d048521_P001	Maize	nucleus	29.28	31.98
TraesCS7B01G486800.1	Wheat	nucleus	26.3	31.83
Zm00001d036338_P001	Maize	nucleus	24.32	31.41
Os06t0729900-00	Rice	nucleus	25.31	31.1
HORVU4Hr1G089910.8	Barley	cytosol	20.1	30.57
EER89011	Sorghum	nucleus	25.56	30.29
HORVU1Hr1G042690.2	Barley	plastid	32.26	29.68
HORVU7Hr1G120120.1	Barley	cytosol	27.3	28.72

Protein Annotations

EnsemblPlants:CDY61916	EnsemblPlantsGene:GSBRNA2T00034574001	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom
InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFAM:PF01476	PFscan:PS51782	ProteinID:CDY61916
ProteinID:CDY61916.1	SEG:seg	SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI0004EBAD74	UniProt:A0A078JCA8
MapMan:35.2	:	:	:	:	:

Description

BnaC07g49750DBnaC07g49750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCA8]

Coordinates

chrLK034059:-:28283..30397

Molecular Weight (calculated)

43538.1 Da

IEP (calculated)

10.037

GRAVY (calculated)

-0.598

Length

403 amino acids

Sequence
(BLAST)

001: MLTDRGRRVS ICIGTLEYGN RKFRGGGGGG CYGGFVDRSS ERCRDWSPSK SSASRILRIS SPTTSPPSSA TSPVSLNCSF SNGAGYIEHR VSKFDTLAGI
101: AIKYGVEVAD ITKLNGLVTD LQMFALKSLR IPLPGRHPPS PCLSNASFNH GEDCSEPASS SANNGNLQDV FDPFQSLKLK PSETKISPAM DSLQGYYGLK
201: PTNKRASEAS YPQEDNDQYL TPSPATSTPL NQHRKSRSLV DAVIAEVNQS SYQSKEVNSD KPTRRRQKSE ADFSSRTPEL LLKKESRSSC GGFSAIAEKG
301: LALRPKAASK TNLSADTGSF NPVPINLMDA PVGDSFSSVR KSFSASVLQE PFSNNNNKGS SSLWQSSKWS LKADLLQQAA MARSIFDGLP KPLTGRRNKK
401: AMD

Best Arabidopsis Sequence Match ( AT5G23130.1 )
(BLAST)

001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD

Arabidopsis Description

Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.