Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G160800.1 | Wheat | nucleus | 93.31 | 93.84 |
| Zm00001d032656_P001 | Maize | nucleus | 69.64 | 69.64 |
| Os10t0485500-01 | Rice | cytosol | 71.31 | 69.57 |
| EER94055 | Sorghum | nucleus | 69.64 | 69.44 |
| HORVU1Hr1G042690.2 | Barley | plastid | 84.68 | 69.41 |
| Zm00001d013983_P001 | Maize | cytosol | 68.8 | 68.8 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 46.52 | 47.44 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 42.9 | 47.09 |
| GSMUA_Achr11P... | Banana | nucleus | 42.34 | 41.99 |
| Solyc11g039960.1.1 | Tomato | nucleus | 39.55 | 41.52 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.28 | 41.35 |
| GSMUA_Achr11P... | Banana | nucleus | 40.67 | 41.13 |
| PGSC0003DMT400027432 | Potato | cytosol | 37.33 | 40.36 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 39.28 | 38.42 |
| Solyc02g014090.2.1 | Tomato | nucleus | 37.05 | 37.05 |
| KRG89129 | Soybean | nucleus | 36.21 | 36.72 |
| KRH40869 | Soybean | nucleus | 35.65 | 35.85 |
| KRH38892 | Soybean | cytosol | 34.82 | 35.82 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 22.84 | 35.65 |
| KRH09395 | Soybean | nucleus | 35.1 | 35.59 |
| Bra005977.1-P | Field mustard | nucleus | 39.55 | 35.32 |
| CDX78327 | Canola | nucleus | 36.77 | 35.2 |
| CDY20605 | Canola | nucleus | 28.13 | 34.71 |
| CDX81087 | Canola | nucleus | 35.65 | 33.95 |
| CDY40759 | Canola | nucleus | 35.38 | 33.78 |
| Bra028667.1-P | Field mustard | nucleus | 35.38 | 33.78 |
| AT5G23130.1 | Thale cress | nucleus | 37.33 | 33.75 |
| CDY21521 | Canola | nucleus | 39.0 | 33.49 |
| AT5G08200.1 | Thale cress | nucleus | 37.88 | 33.25 |
| CDY02209 | Canola | cytosol | 36.21 | 33.25 |
| CDX69966 | Canola | nucleus | 38.72 | 33.1 |
| Bra009329.1-P | Field mustard | nucleus | 38.44 | 33.01 |
| Bra013019.1-P | Field mustard | cytosol | 35.65 | 32.82 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 35.93 | 32.41 |
| Bra008537.1-P | Field mustard | nucleus | 22.01 | 32.24 |
| CDY61916 | Canola | cytosol | 35.38 | 31.51 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 28.13 | 30.33 |
| CDY44762 | Canola | nucleus | 35.1 | 29.37 |
| KRH29144 | Soybean | nucleus | 20.61 | 28.24 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G177500.1 | EnsemblPlantsGene:TraesCS1B01G177500 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | SEG:seg | SMART:SM00257 |
| SUPFAM:SSF54106 | TIGR:cd00118 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:322398141..322401232
Molecular Weight (calculated)
39319.2 Da
IEP (calculated)
9.124
GRAVY (calculated)
-0.730
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPHLPKDH AFPRANGFFD GGPRRLCEIE EADAAAALAA DQSWSGSPSQ STSPSSASSL PMSSCGQYML HRVGKFDTLA GVAIKYGVEV ADVKRLNSLS
101: TDLQMFAHKT LRIPLPGRHP PPFQQNGSYE CDDRECTPRR LRDDLLDSVL RTPRHKVSPA MSLLQGYYGL TPPPKRNPTQ EGTEIAVYGK GKSISLVDEP
201: WSAETPNPNT FMFEHRKPRS QTIGSLVNGE SEENGDGERP VRRRPKADGE LLPREENGSA LLSRAGKGLA LRPKSGTRPD MNKSHQNLIA MSEPSFDGGL
301: QTVKKSSSTP EFQEPESNNS SSSIWSASKW SLKPDAFALP LFDSIPKPIA AWKNKAARD
101: TDLQMFAHKT LRIPLPGRHP PPFQQNGSYE CDDRECTPRR LRDDLLDSVL RTPRHKVSPA MSLLQGYYGL TPPPKRNPTQ EGTEIAVYGK GKSISLVDEP
201: WSAETPNPNT FMFEHRKPRS QTIGSLVNGE SEENGDGERP VRRRPKADGE LLPREENGSA LLSRAGKGLA LRPKSGTRPD MNKSHQNLIA MSEPSFDGGL
301: QTVKKSSSTP EFQEPESNNS SSSIWSASKW SLKPDAFALP LFDSIPKPIA AWKNKAARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.