CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89129	Soybean	nucleus	85.43	86.16
PGSC0003DMT400027432	Potato	cytosol	50.42	54.22
Solyc02g014090.2.1	Tomato	nucleus	52.38	52.09
VIT_01s0011g02130.t01	Wine grape	nucleus	54.06	48.49
PGSC0003DMT400050883	Potato	nucleus	45.38	47.51
Solyc11g039960.1.1	Tomato	nucleus	45.38	47.37
GSMUA_Achr4P29860_001	Banana	nucleus	39.22	42.81
KRH38892	Soybean	cytosol	40.34	41.26
GSMUA_Achr11P...	Banana	nucleus	40.62	40.85
KRH29144	Soybean	nucleus	29.69	40.46
GSMUA_Achr2P10710_001	Banana	nucleus	40.9	39.78
KRH09395	Soybean	nucleus	39.22	39.55
GSMUA_Achr11P...	Banana	nucleus	40.06	39.5
Os10t0485500-01	Rice	cytosol	37.25	36.14
TraesCS1A01G160800.1	Wheat	nucleus	35.85	35.85
TraesCS1B01G177500.1	Wheat	nucleus	35.85	35.65
TraesCSU01G126200.1	Wheat	cytosol	33.89	34.87
Zm00001d032656_P001	Maize	nucleus	34.73	34.54
EER94055	Sorghum	nucleus	34.73	34.44
TraesCS4B01G387000.1	Wheat	cytosol	33.89	34.38
TraesCS5A01G551300.1	Wheat	cytosol	33.05	34.3
Zm00001d013983_P001	Maize	cytosol	34.45	34.26
Zm00001d027325_P002	Maize	cytosol	27.73	33.0
EER95660	Sorghum	nucleus	31.37	32.0
TraesCS7A01G560400.1	Wheat	nucleus	29.13	31.8
HORVU4Hr1G089910.8	Barley	cytosol	23.25	31.32
Zm00001d048521_P001	Maize	nucleus	32.21	31.17
TraesCS7D01G549400.1	Wheat	nucleus	28.57	31.1
HORVU1Hr1G042690.2	Barley	plastid	37.53	30.59
TraesCS7B01G486800.1	Wheat	nucleus	27.17	29.13
Os06t0729900-00	Rice	nucleus	26.05	28.35
EER89011	Sorghum	nucleus	25.77	27.06
HORVU7Hr1G120120.1	Barley	cytosol	28.01	26.11
Zm00001d036338_P001	Maize	nucleus	21.85	25.0

Protein Annotations

EMBL:ACUP02006067	EnsemblPlants:KRH40869	EnsemblPlantsGene:GLYMA_09G282400	EntrezGene:100780383	Gene3D:3.10.350.10	InterPro:IPR018392
InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFscan:PS51782
ProteinID:KRH40869	ProteinID:KRH40869.1	SEG:seg	SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI00023C96FE
UniProt:K7LGK8	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:49794483..49798633

Molecular Weight (calculated)

39096.9 Da

IEP (calculated)

9.227

GRAVY (calculated)

-0.698

Length

357 amino acids

Sequence
(BLAST)

001: MERENWREHI NSNSNGNYYD RFVCDYDNGE RSPAKPSSPP RLGYIEHHVS KFDTLAGVAI KYGVEVADIR KMNSLVTDHQ MFALKTLHIP LPARHPPSPY
101: LSNGSSTPGH GNSDHSPPNQ AHHDLLDSFQ SLRIKSSERK VSPAMNSLQG YYGLKGTPSP SEDGPFPRNL PMSDRPLSHH RKSRSLVNVI LEEIMEKSDD
201: ALAAETREVG SNKWNDKLGL RHQKSVADFI RIPELLLRED NSSSGVLPSR TGKGLALRQK AANRTTATTD SEPIGLNPAA LGMGDASLID GSSGVRKSSS
301: TSCLQDQDNS GSSSIWPTKM WNLKPDLQAL STAAIGKPIF DGFPKPITGR KNKAALD

Best Arabidopsis Sequence Match ( AT5G08200.1 )
(BLAST)

001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD

Arabidopsis Description

At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.