Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P10710_001 | Banana | nucleus | 65.44 | 58.31 |
| GSMUA_Achr11P... | Banana | nucleus | 52.91 | 47.79 |
| GSMUA_Achr11P... | Banana | nucleus | 49.85 | 45.92 |
| Zm00001d032656_P001 | Maize | nucleus | 48.01 | 43.73 |
| PGSC0003DMT400027432 | Potato | cytosol | 44.34 | 43.67 |
| Zm00001d013983_P001 | Maize | cytosol | 47.4 | 43.18 |
| EER94055 | Sorghum | nucleus | 47.4 | 43.06 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 47.09 | 42.9 |
| Os10t0485500-01 | Rice | cytosol | 47.71 | 42.39 |
| KRG89129 | Soybean | nucleus | 45.26 | 41.81 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 44.95 | 41.18 |
| Solyc02g014090.2.1 | Tomato | nucleus | 44.34 | 40.39 |
| CDY20605 | Canola | nucleus | 35.78 | 40.21 |
| CDX81087 | Canola | nucleus | 46.18 | 40.05 |
| CDX78327 | Canola | nucleus | 45.87 | 40.0 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 48.01 | 39.45 |
| KRH40869 | Soybean | nucleus | 42.81 | 39.22 |
| Bra005977.1-P | Field mustard | nucleus | 47.71 | 38.81 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.14 | 37.54 |
| Solyc11g039960.1.1 | Tomato | nucleus | 39.14 | 37.43 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 26.3 | 37.39 |
| KRH09395 | Soybean | nucleus | 40.37 | 37.29 |
| Bra013019.1-P | Field mustard | cytosol | 44.34 | 37.18 |
| Bra008537.1-P | Field mustard | nucleus | 27.83 | 37.14 |
| CDY02209 | Canola | cytosol | 44.34 | 37.08 |
| AT5G23130.1 | Thale cress | nucleus | 44.95 | 37.03 |
| KRH38892 | Soybean | cytosol | 39.45 | 36.96 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 38.84 | 36.92 |
| TraesCSU01G126200.1 | Wheat | cytosol | 39.14 | 36.89 |
| AT5G08200.1 | Thale cress | nucleus | 45.87 | 36.67 |
| CDY21521 | Canola | nucleus | 46.79 | 36.6 |
| CDX69966 | Canola | nucleus | 46.79 | 36.43 |
| Bra009329.1-P | Field mustard | nucleus | 46.48 | 36.36 |
| Zm00001d027325_P002 | Maize | cytosol | 33.03 | 36.0 |
| EER95660 | Sorghum | nucleus | 38.53 | 36.0 |
| Bra028667.1-P | Field mustard | nucleus | 41.28 | 35.9 |
| CDY40759 | Canola | nucleus | 41.28 | 35.9 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 38.53 | 35.8 |
| CDY61916 | Canola | cytosol | 44.04 | 35.73 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 34.25 | 34.15 |
| Os06t0729900-00 | Rice | nucleus | 33.33 | 33.23 |
| KRH29144 | Soybean | nucleus | 26.61 | 33.21 |
| HORVU1Hr1G042690.2 | Barley | plastid | 44.04 | 32.88 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 32.72 | 32.72 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 26.3 | 32.45 |
| CDY44762 | Canola | nucleus | 41.28 | 31.47 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 31.8 | 31.23 |
| Zm00001d048521_P001 | Maize | nucleus | 34.86 | 30.89 |
| EER89011 | Sorghum | nucleus | 32.11 | 30.88 |
| Zm00001d036338_P001 | Maize | nucleus | 27.52 | 28.85 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 33.64 | 28.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P29860_001 | EnsemblPlants:GSMUA_Achr4T29860_001 | EnsemblPlantsGene:GSMUA_Achr4G29860_001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 | PFscan:PS51782 |
| SEG:seg | SUPFAM:SSF54106 | UniParc:UPI0002950AC5 | UniProt:M0ST98 | MapMan:35.2 | : |
Description
lysM domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G29860_001]
Coordinates
chr4:+:27704854..27706277
Molecular Weight (calculated)
35816.5 Da
IEP (calculated)
10.218
GRAVY (calculated)
-0.655
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAEMMSRRD FQLFADGFLD GNVRRPTEIE GIATINVTSS LPSPSSPSSS PGSSAGSSHI HHRVSKMDTL AGVAIKYGVE VADIKRLNGL VTDLQMFAHK
101: SLQIPLPGRH PPSTYLCDGS VENGEHSPPY QPRNDVLDLI ESLNWKPSAC KVSPAMSKLQ GYYGLTPNKR RPELGGAEMA DYKVGRRCLN DELSSKESPT
201: SDPFPRRHRK SIRRRQKTDT PEFLDSNGGF SGRVGKGIAP RPKPGSRTDT DTKRLSAILS GDSVKTEGLF SVRKSSSTSC LQSQDPDNNS SLWPRSKWIL
301: KPDVLARPIF DGLPKSMTAK RNKAALD
101: SLQIPLPGRH PPSTYLCDGS VENGEHSPPY QPRNDVLDLI ESLNWKPSAC KVSPAMSKLQ GYYGLTPNKR RPELGGAEMA DYKVGRRCLN DELSSKESPT
201: SDPFPRRHRK SIRRRQKTDT PEFLDSNGGF SGRVGKGIAP RPKPGSRTDT DTKRLSAILS GDSVKTEGLF SVRKSSSTSC LQSQDPDNNS SLWPRSKWIL
301: KPDVLARPIF DGLPKSMTAK RNKAALD
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.