Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69966 | Canola | nucleus | 94.02 | 93.57 |
| AT5G08200.1 | Thale cress | nucleus | 81.34 | 83.13 |
| CDY20605 | Canola | nucleus | 57.18 | 82.13 |
| CDX78327 | Canola | nucleus | 71.53 | 79.73 |
| CDX81087 | Canola | nucleus | 71.77 | 79.58 |
| CDY40759 | Canola | nucleus | 69.86 | 77.66 |
| CDY44762 | Canola | nucleus | 72.73 | 70.86 |
| CDY02209 | Canola | cytosol | 55.26 | 59.08 |
| CDY61916 | Canola | cytosol | 56.94 | 59.06 |
| PGSC0003DMT400027432 | Potato | cytosol | 40.43 | 50.9 |
| PGSC0003DMT400050883 | Potato | nucleus | 40.19 | 49.27 |
| Solyc11g039960.1.1 | Tomato | nucleus | 40.19 | 49.12 |
| Solyc02g014090.2.1 | Tomato | nucleus | 41.15 | 47.91 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 36.6 | 46.79 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 44.02 | 46.23 |
| GSMUA_Achr11P... | Banana | nucleus | 36.36 | 42.82 |
| GSMUA_Achr11P... | Banana | nucleus | 36.84 | 42.54 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 36.12 | 41.14 |
| KRH29144 | Soybean | nucleus | 25.36 | 40.46 |
| Zm00001d032656_P001 | Maize | nucleus | 34.45 | 40.11 |
| Os10t0485500-01 | Rice | cytosol | 34.93 | 39.67 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 33.49 | 39.22 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 33.49 | 39.0 |
| EER94055 | Sorghum | nucleus | 33.25 | 38.61 |
| Zm00001d013983_P001 | Maize | cytosol | 32.78 | 38.16 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 31.58 | 37.5 |
| TraesCSU01G126200.1 | Wheat | cytosol | 31.1 | 37.46 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 30.14 | 36.63 |
| Zm00001d027325_P002 | Maize | cytosol | 25.36 | 35.33 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 27.51 | 35.17 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 27.51 | 35.06 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 22.01 | 34.72 |
| EER95660 | Sorghum | nucleus | 28.23 | 33.71 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 26.79 | 33.63 |
| Os06t0729900-00 | Rice | nucleus | 26.08 | 33.23 |
| Zm00001d048521_P001 | Maize | nucleus | 28.71 | 32.52 |
| Zm00001d036338_P001 | Maize | nucleus | 24.16 | 32.37 |
| EER89011 | Sorghum | nucleus | 26.32 | 32.35 |
| HORVU1Hr1G042690.2 | Barley | plastid | 32.78 | 31.28 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 27.03 | 29.5 |
Protein Annotations
| EnsemblPlants:CDY21521 | EnsemblPlantsGene:GSBRNA2T00015961001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | ProteinID:CDY21521 | ProteinID:CDY21521.1 |
| SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0004EF3EEF | UniProt:A0A078G825 | MapMan:35.2 |
Description
BnaC09g47710DBnaC09g47710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G825]
Coordinates
chrLK032122:+:64992..67577
Molecular Weight (calculated)
45688.0 Da
IEP (calculated)
9.448
GRAVY (calculated)
-0.806
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMDRERRLS NRNGTPQYSN GKFRDDDCYG GFLDRFENSR EKSPSRSKIL RIPSPTSSPP PSSSSPPFPG SNSPDRGYIE HRVSKFDTLA GIAIKYGVEV
101: ADVKKMNGLV TDLQMFALKS LQIPLPGRHP PSPCLSNGSL HHGEGCSCHE LEPPNDSNND VFDSFQSLRL KSSDKKVSPA MSSLQGYYGL KPADRTVSEG
201: GFLEMGTYNK TETSHHHHLS SNGGNHQYLR PFPSTNTPLN HHRKSRSLAN ALFDEVNQSP DNNTAQETSA DKFRRRRQKS EADFSSRTPE LLLKEENSSS
301: NGGFLSIAGK GLALRSKASS RTNLSSAESE TSNFNPVPIN LMDAPVSDSF SSVRKSSSAS SLQDPEGNSS NGSSSLSLWP TSKWSLKPDL LTPAAITSSI
401: FDGLPKPLTG RKNKTAMD
101: ADVKKMNGLV TDLQMFALKS LQIPLPGRHP PSPCLSNGSL HHGEGCSCHE LEPPNDSNND VFDSFQSLRL KSSDKKVSPA MSSLQGYYGL KPADRTVSEG
201: GFLEMGTYNK TETSHHHHLS SNGGNHQYLR PFPSTNTPLN HHRKSRSLAN ALFDEVNQSP DNNTAQETSA DKFRRRRQKS EADFSSRTPE LLLKEENSSS
301: NGGFLSIAGK GLALRSKASS RTNLSSAESE TSNFNPVPIN LMDAPVSDSF SSVRKSSSAS SLQDPEGNSS NGSSSLSLWP TSKWSLKPDL LTPAAITSSI
401: FDGLPKPLTG RKNKTAMD
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.