Factsheet for GSMUA_Achr2P10710_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P29860_001	Banana	nucleus	58.31	65.44
GSMUA_Achr11P...	Banana	nucleus	49.32	50.0
GSMUA_Achr11P...	Banana	nucleus	45.78	47.32
PGSC0003DMT400027432	Potato	cytosol	39.51	43.67
KRG89129	Soybean	nucleus	41.69	43.22
Zm00001d032656_P001	Maize	nucleus	41.42	42.34
Zm00001d013983_P001	Maize	cytosol	41.42	42.34
EER94055	Sorghum	nucleus	41.42	42.22
VIT_17s0053g00210.t01	Wine grape	cytosol	26.16	41.74
Solyc02g014090.2.1	Tomato	nucleus	40.05	40.95
KRH40869	Soybean	nucleus	39.78	40.9
CDY20605	Canola	nucleus	32.15	40.55
Os10t0485500-01	Rice	cytosol	40.05	39.95
TraesCS1A01G160800.1	Wheat	nucleus	38.69	39.78
TraesCS1B01G177500.1	Wheat	nucleus	38.42	39.28
CDX78327	Canola	nucleus	40.05	39.2
VIT_01s0011g02130.t01	Wine grape	nucleus	42.51	39.2
CDX81087	Canola	nucleus	40.05	38.99
Bra005977.1-P	Field mustard	nucleus	42.51	38.81
TraesCSU01G126200.1	Wheat	cytosol	36.24	38.33
TraesCS5A01G551300.1	Wheat	cytosol	35.69	38.08
PGSC0003DMT400050883	Potato	nucleus	34.88	37.54
Solyc11g039960.1.1	Tomato	nucleus	34.88	37.43
KRH09395	Soybean	nucleus	35.97	37.29
TraesCS4B01G387000.1	Wheat	cytosol	35.42	36.93
AT5G08200.1	Thale cress	nucleus	40.87	36.67
AT5G23130.1	Thale cress	nucleus	39.51	36.52
KRH38892	Soybean	cytosol	34.6	36.39
CDY02209	Canola	cytosol	38.69	36.32
EER95660	Sorghum	nucleus	34.6	36.29
Bra013019.1-P	Field mustard	cytosol	38.42	36.15
CDY21521	Canola	nucleus	41.14	36.12
CDY61916	Canola	cytosol	39.51	35.98
Bra008537.1-P	Field mustard	nucleus	23.98	35.92
CDY40759	Canola	nucleus	36.78	35.9
Bra009329.1-P	Field mustard	nucleus	40.6	35.65
Bra028667.1-P	Field mustard	nucleus	36.51	35.64
CDX69966	Canola	nucleus	40.6	35.48
Zm00001d027325_P002	Maize	cytosol	28.88	35.33
TraesCS7A01G560400.1	Wheat	nucleus	31.34	35.17
TraesCS7D01G549400.1	Wheat	nucleus	31.34	35.06
KRH29144	Soybean	nucleus	24.8	34.73
HORVU4Hr1G089910.8	Barley	cytosol	25.07	34.72
EER89011	Sorghum	nucleus	32.15	34.71
Os06t0729900-00	Rice	nucleus	30.52	34.15
Zm00001d036338_P001	Maize	nucleus	28.61	33.65
TraesCS7B01G486800.1	Wheat	nucleus	29.97	33.03
Zm00001d048521_P001	Maize	nucleus	32.97	32.79
HORVU1Hr1G042690.2	Barley	plastid	38.15	31.96
CDY44762	Canola	nucleus	36.78	31.47
HORVU7Hr1G120120.1	Barley	cytosol	31.61	30.29

Protein Annotations

EnsemblPlants:GSMUA_Achr2P10710_001	EnsemblPlants:GSMUA_Achr2T10710_001	EnsemblPlantsGene:GSMUA_Achr2G10710_001	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFAM:PF01476	PFscan:PS51782
SEG:seg	SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI0002954ABA	UniProt:M0S6W2	MapMan:35.2

Description

lysM domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G10710_001]

Coordinates

chr2:-:13741449..13743833

Molecular Weight (calculated)

40623.3 Da

IEP (calculated)

9.445

GRAVY (calculated)

-0.587

Length

367 amino acids

Sequence
(BLAST)

001: MLAEGSRRNS QLFSDDSLDG DVARPREIDG IATIPVSSSL SPSSPPGFSL ESNHIQHRVS RMDTLAGVAI KYGVEVADIK RLNGLVTDLQ MFAHKSLQIP
101: LPGRHPPSPC LSDGSIENRY FLLPLPSNHI SSYPPHRPCN DVLELIESIN MRPRLRKVSP AMSRLQGYYG LGHTKRRPVL GGEDMSLYGT GKCCFDDELL
201: YKKSPTSDPP PSRHRKSRSL MNGFSLENGY IADEKAVFEA GENSDIERSI RRRQKTDTPE LFLEDSNGGF SGRTGKGIAP RPKSGYRIDT DVGRLSVLPN
301: GDYVKNEALA SVRKSSSTSC LQSQDFDNIS SMWPMSKWSL KSDVLARPIF DGLPKSMTVR RNKAARD

Best Arabidopsis Sequence Match ( AT5G23130.1 )
(BLAST)

001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD

Arabidopsis Description

Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.