Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G126200.1 | Wheat | cytosol | 88.66 | 87.9 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 84.3 | 82.39 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 52.62 | 68.3 |
| EER95660 | Sorghum | nucleus | 59.3 | 58.29 |
| Zm00001d048521_P001 | Maize | nucleus | 58.43 | 54.47 |
| Zm00001d027325_P002 | Maize | cytosol | 47.09 | 54.0 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 50.58 | 48.74 |
| PGSC0003DMT400027432 | Potato | cytosol | 39.53 | 40.96 |
| GSMUA_Achr11P... | Banana | nucleus | 40.99 | 39.72 |
| Solyc02g014090.2.1 | Tomato | nucleus | 40.7 | 39.0 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 36.92 | 38.84 |
| GSMUA_Achr11P... | Banana | nucleus | 40.41 | 38.4 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 38.08 | 35.69 |
| KRH38892 | Soybean | cytosol | 35.76 | 35.24 |
| Solyc11g039960.1.1 | Tomato | nucleus | 34.88 | 35.09 |
| PGSC0003DMT400050883 | Potato | nucleus | 34.59 | 34.9 |
| KRH09395 | Soybean | nucleus | 35.17 | 34.18 |
| KRH40869 | Soybean | nucleus | 34.3 | 33.05 |
| KRG89129 | Soybean | nucleus | 34.01 | 33.05 |
| CDY20605 | Canola | nucleus | 27.33 | 32.3 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 37.21 | 32.16 |
| CDX78327 | Canola | nucleus | 34.88 | 32.0 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 21.22 | 31.74 |
| CDX81087 | Canola | nucleus | 34.01 | 31.03 |
| CDY40759 | Canola | nucleus | 33.72 | 30.85 |
| Bra028667.1-P | Field mustard | nucleus | 33.72 | 30.85 |
| Bra013019.1-P | Field mustard | cytosol | 34.59 | 30.51 |
| Bra005977.1-P | Field mustard | nucleus | 35.47 | 30.35 |
| Bra008537.1-P | Field mustard | nucleus | 21.51 | 30.2 |
| CDY02209 | Canola | cytosol | 34.3 | 30.18 |
| CDY21521 | Canola | nucleus | 36.63 | 30.14 |
| AT5G23130.1 | Thale cress | nucleus | 34.59 | 29.97 |
| AT5G08200.1 | Thale cress | nucleus | 35.47 | 29.83 |
| Bra009329.1-P | Field mustard | nucleus | 36.05 | 29.67 |
| CDX69966 | Canola | nucleus | 36.05 | 29.52 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 27.62 | 29.05 |
| CDY61916 | Canola | cytosol | 32.85 | 28.04 |
| KRH29144 | Soybean | nucleus | 20.64 | 27.1 |
| CDY44762 | Canola | nucleus | 33.43 | 26.81 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G551300.1 | EnsemblPlantsGene:TraesCS5A01G551300 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF14 | PFscan:PS51782 | SEG:seg | SUPFAM:SSF54106 |
| TIGR:cd00118 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:704833104..704835243
Molecular Weight (calculated)
37215.2 Da
IEP (calculated)
9.600
GRAVY (calculated)
-0.511
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVHAAPFPF PLPRREEDDA IVLGRGGDRW GAAAMPAEDE AVEQSPTAPP ISSCGRYILH RVCRFDTLAG VAIKYGVEVA DVKRVNGLTA DLQMFAHKTL
101: RIPLPGRHPP AQHSPPSSSP AAAAAAREWT TRRPPKNAAL DPFQKPPRST VSPSMSLLQG YYGLAPPPKR DLTDEGTEMA TSVKGQHRKA RSISTGFPGV
201: NGDAGWDTDD AEKQIRRRQK ADLELTTMRE DNGGALLPRT GEGLALRPKS GSRPDMNNSQ QDLIAAGFVP SYGDGLLAVR KSSSTPEFQD SDNNIASVWL
301: SKWNLKPDAF AVPLPILLLD SLPKPLFDSL PKPIAAWRNK AARD
101: RIPLPGRHPP AQHSPPSSSP AAAAAAREWT TRRPPKNAAL DPFQKPPRST VSPSMSLLQG YYGLAPPPKR DLTDEGTEMA TSVKGQHRKA RSISTGFPGV
201: NGDAGWDTDD AEKQIRRRQK ADLELTTMRE DNGGALLPRT GEGLALRPKS GSRPDMNNSQ QDLIAAGFVP SYGDGLLAVR KSSSTPEFQD SDNNIASVWL
301: SKWNLKPDAF AVPLPILLLD SLPKPLFDSL PKPIAAWRNK AARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.