CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38892	Soybean	cytosol	91.53	92.84
VIT_17s0053g00210.t01	Wine grape	cytosol	31.64	48.7
GSMUA_Achr4P29860_001	Banana	nucleus	37.29	40.37
GSMUA_Achr11P...	Banana	nucleus	40.96	40.06
KRG89129	Soybean	nucleus	39.83	39.83
KRH40869	Soybean	nucleus	39.55	39.22
GSMUA_Achr11P...	Banana	nucleus	37.85	37.75
Zm00001d032656_P001	Maize	nucleus	38.14	37.6
EER94055	Sorghum	nucleus	37.57	36.94
Zm00001d013983_P001	Maize	cytosol	36.72	36.21
GSMUA_Achr2P10710_001	Banana	nucleus	37.29	35.97
Os10t0485500-01	Rice	cytosol	37.01	35.6
TraesCS1A01G160800.1	Wheat	nucleus	35.59	35.29
TraesCS5A01G551300.1	Wheat	cytosol	34.18	35.17
TraesCS1B01G177500.1	Wheat	nucleus	35.59	35.1
TraesCSU01G126200.1	Wheat	cytosol	34.18	34.87
Zm00001d027325_P002	Maize	cytosol	28.81	34.0
TraesCS7D01G549400.1	Wheat	nucleus	31.07	33.54
EER95660	Sorghum	nucleus	33.05	33.43
TraesCS7A01G560400.1	Wheat	nucleus	30.51	33.03
TraesCS4B01G387000.1	Wheat	cytosol	32.77	32.95
HORVU4Hr1G089910.8	Barley	cytosol	24.58	32.83
KRH29144	Soybean	nucleus	23.45	31.68
TraesCS7B01G486800.1	Wheat	nucleus	29.38	31.23
Zm00001d048521_P001	Maize	nucleus	32.49	31.17
EER89011	Sorghum	nucleus	29.1	30.29
Os06t0729900-00	Rice	nucleus	27.68	29.88
HORVU1Hr1G042690.2	Barley	plastid	35.59	28.77
HORVU7Hr1G120120.1	Barley	cytosol	30.51	28.2
Zm00001d036338_P001	Maize	nucleus	24.29	27.56

Protein Annotations

EMBL:ACUP02010276	EnsemblPlants:KRH09395	EnsemblPlantsGene:GLYMA_16G213400	EntrezGene:100816543	Gene3D:3.10.350.10	InterPro:IPR018392
InterPro:IPR036779	InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF11	PFscan:PS51782
ProteinID:KRH09395	ProteinID:KRH09395.1	SEG:seg	SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI000233B353
UniProt:I1MQH5	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:37145525..37148978

Molecular Weight (calculated)

37300.9 Da

IEP (calculated)

7.852

GRAVY (calculated)

-0.518

Length

354 amino acids

Sequence
(BLAST)

001: MSPSNGLHNG GGGGSGGGGG NGVSYIEHQV SKLDTLAGVA IKYGVEVADI KRMNGLATDL QMFALKTLKI PLPGRHPPSP APGPHDEPAK SGEASIERKP
101: LRIGQSAMKE PLQSLGLKPP QPNISPAMSI LQKFYGLKSS NSRDTLNGTE MAVYLSSNSD HSSGEWLPKA SPILDLPSAS NDYPRSTNLV YDLLTGDDEY
201: VPLAEIGDTG VEKSDEKSVR RRQKAEVDNG TSTPEKIMKE GNGNGSNGLS SNGKTLAMRP KSASRAALFP ESESGWLDSI PVGLGESIFT DGFSGVRKSS
301: SASSLREQEK NNSAAAWPPA IWSLKPDLQA AISKPIFDGL PIPISGRRSK AALD

Best Arabidopsis Sequence Match ( AT5G23130.1 )
(BLAST)

001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD

Arabidopsis Description

Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.