Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 61.6 | 62.82 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 47.79 | 52.91 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 50.0 | 49.32 |
| Os10t0485500-01 | Rice | cytosol | 44.2 | 43.48 |
| EER94055 | Sorghum | nucleus | 42.82 | 43.06 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 27.35 | 43.04 |
| PGSC0003DMT400027432 | Potato | cytosol | 39.23 | 42.77 |
| Zm00001d032656_P001 | Maize | nucleus | 42.27 | 42.62 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 41.99 | 42.34 |
| Zm00001d013983_P001 | Maize | cytosol | 41.71 | 42.06 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 41.44 | 42.02 |
| KRG89129 | Soybean | nucleus | 40.61 | 41.53 |
| Solyc11g039960.1.1 | Tomato | nucleus | 39.23 | 41.52 |
| PGSC0003DMT400050883 | Potato | nucleus | 38.95 | 41.35 |
| Solyc02g014090.2.1 | Tomato | nucleus | 40.88 | 41.23 |
| KRH09395 | Soybean | nucleus | 40.06 | 40.96 |
| CDY20605 | Canola | nucleus | 32.87 | 40.89 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 38.4 | 40.41 |
| KRH38892 | Soybean | cytosol | 38.95 | 40.4 |
| TraesCSU01G126200.1 | Wheat | cytosol | 38.67 | 40.35 |
| KRH40869 | Soybean | nucleus | 39.5 | 40.06 |
| CDX78327 | Canola | nucleus | 41.44 | 40.0 |
| CDX81087 | Canola | nucleus | 41.16 | 39.52 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 43.09 | 39.2 |
| Bra008537.1-P | Field mustard | nucleus | 26.52 | 39.18 |
| Bra005977.1-P | Field mustard | nucleus | 43.09 | 38.81 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 37.02 | 38.07 |
| CDY21521 | Canola | nucleus | 42.54 | 36.84 |
| CDY02209 | Canola | cytosol | 39.78 | 36.83 |
| AT5G23130.1 | Thale cress | nucleus | 40.33 | 36.78 |
| AT5G08200.1 | Thale cress | nucleus | 41.44 | 36.67 |
| Bra013019.1-P | Field mustard | cytosol | 39.5 | 36.67 |
| Os06t0729900-00 | Rice | nucleus | 33.15 | 36.59 |
| EER95660 | Sorghum | nucleus | 35.36 | 36.57 |
| Bra009329.1-P | Field mustard | nucleus | 41.99 | 36.36 |
| CDX69966 | Canola | nucleus | 41.99 | 36.19 |
| CDY40759 | Canola | nucleus | 37.29 | 35.9 |
| Bra028667.1-P | Field mustard | nucleus | 37.29 | 35.9 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 26.24 | 35.85 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 32.04 | 35.37 |
| CDY61916 | Canola | cytosol | 39.23 | 35.24 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 31.77 | 35.17 |
| Zm00001d027325_P002 | Maize | cytosol | 29.01 | 35.0 |
| HORVU1Hr1G042690.2 | Barley | plastid | 42.27 | 34.93 |
| KRH29144 | Soybean | nucleus | 24.86 | 34.35 |
| EER89011 | Sorghum | nucleus | 32.04 | 34.12 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 30.94 | 33.63 |
| Zm00001d048521_P001 | Maize | nucleus | 33.43 | 32.79 |
| Zm00001d036338_P001 | Maize | nucleus | 27.62 | 32.05 |
| CDY44762 | Canola | nucleus | 37.85 | 31.93 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 33.15 | 31.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P01740_001 | EnsemblPlants:GSMUA_Achr11T01740_001 | EnsemblPlantsGene:GSMUA_Achr11G01740_001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | SEG:seg |
| UniParc:UPI0002957B69 | UniProt:M0RNK4 | MapMan:35.2 | : | : | : |
Description
lysM domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G01740_001]
Coordinates
chr11:+:1173206..1175997
Molecular Weight (calculated)
39419.3 Da
IEP (calculated)
9.313
GRAVY (calculated)
-0.589
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIRRSSQLF SDGFLDGAVS RSRENGTIAT IPASSSVSSF SSSSSDSPPK VNYIEHRVSK MDTLPGVAIK YGVEVEDVKR LNGLTTDIQM FAHKSLQIPL
101: PGRHPPSTRS TNGSAANGFS KEHTPPRHPS NGVLDFLQSL KLKTPSTKVS PAMNNLRSYY GLTQFEKDPV LEGTEMAVYR IGDCCLADEL LPTEAPFSDS
201: LIGQHQKSRS LVNGFSPENG KTAQEKTILD TAENNEIEKA VRRRQKNDSV PSLGTPELLL EDNNSGFSGR KGKGLSMRPK LGSRTDVDMV HPNASPNGDS
301: FVTNGSVFVR KSSSTSSLQE SENSSSIWPT SKWTLNPEVL ARPLFDGLPK PINVWKNKAA LD
101: PGRHPPSTRS TNGSAANGFS KEHTPPRHPS NGVLDFLQSL KLKTPSTKVS PAMNNLRSYY GLTQFEKDPV LEGTEMAVYR IGDCCLADEL LPTEAPFSDS
201: LIGQHQKSRS LVNGFSPENG KTAQEKTILD TAENNEIEKA VRRRQKNDSV PSLGTPELLL EDNNSGFSGR KGKGLSMRPK LGSRTDVDMV HPNASPNGDS
301: FVTNGSVFVR KSSSTSSLQE SENSSSIWPT SKWTLNPEVL ARPLFDGLPK PINVWKNKAA LD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.