Factsheet for PGSC0003DMT400027432

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g014090.2.1	Tomato	nucleus	92.47	85.52
PGSC0003DMT400050883	Potato	nucleus	63.55	61.88
VIT_01s0011g02130.t01	Wine grape	nucleus	63.55	53.02
KRH40869	Soybean	nucleus	54.22	50.42
KRG89129	Soybean	nucleus	53.61	50.28
CDY20605	Canola	nucleus	43.37	49.48
GSMUA_Achr4P29860_001	Banana	nucleus	43.67	44.34
CDX78327	Canola	nucleus	50.0	44.27
GSMUA_Achr11P...	Banana	nucleus	47.29	44.23
Bra008537.1-P	Field mustard	nucleus	32.23	43.67
CDX81087	Canola	nucleus	48.8	42.97
Bra028667.1-P	Field mustard	nucleus	47.59	42.02
CDY40759	Canola	nucleus	47.29	41.76
Bra005977.1-P	Field mustard	nucleus	50.3	41.54
AT5G08200.1	Thale cress	nucleus	50.9	41.32
KRH29144	Soybean	nucleus	32.53	41.22
Bra009329.1-P	Field mustard	nucleus	51.51	40.91
AT5G23130.1	Thale cress	nucleus	48.8	40.81
Os10t0485500-01	Rice	cytosol	45.18	40.76
CDX69966	Canola	nucleus	51.2	40.48
CDY21521	Canola	nucleus	50.9	40.43
Zm00001d032656_P001	Maize	nucleus	43.67	40.39
EER94055	Sorghum	nucleus	43.67	40.28
CDY02209	Canola	cytosol	46.99	39.9
Bra013019.1-P	Field mustard	cytosol	46.69	39.74
CDY61916	Canola	cytosol	48.19	39.7
Zm00001d013983_P001	Maize	cytosol	42.77	39.55
TraesCS5A01G551300.1	Wheat	cytosol	40.96	39.53
GSMUA_Achr2P10710_001	Banana	nucleus	43.67	39.51
GSMUA_Achr11P...	Banana	nucleus	42.77	39.23
TraesCSU01G126200.1	Wheat	cytosol	40.36	38.62
TraesCS1B01G177500.1	Wheat	nucleus	40.36	37.33
TraesCS1A01G160800.1	Wheat	nucleus	40.06	37.25
TraesCS4B01G387000.1	Wheat	cytosol	39.16	36.93
CDY44762	Canola	nucleus	47.59	36.83
EER95660	Sorghum	nucleus	37.35	35.43
TraesCS7A01G560400.1	Wheat	nucleus	34.64	35.17
HORVU4Hr1G089910.8	Barley	cytosol	28.01	35.09
TraesCS7D01G549400.1	Wheat	nucleus	33.73	34.15
Zm00001d027325_P002	Maize	cytosol	30.12	33.33
Os06t0729900-00	Rice	nucleus	32.83	33.23
Zm00001d048521_P001	Maize	nucleus	36.75	33.06
TraesCS7B01G486800.1	Wheat	nucleus	31.93	31.83
EER89011	Sorghum	nucleus	32.23	31.47
HORVU1Hr1G042690.2	Barley	plastid	40.06	30.37
Zm00001d036338_P001	Maize	nucleus	28.31	30.13
HORVU7Hr1G120120.1	Barley	cytosol	32.83	28.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400027432	EnsemblPlantsGene:PGSC0003DMG400010579	EntrezGene:102602521	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFAM:PF01476	PFscan:PS51782
PGSC:PGSC0003DMG400010579	RefSeq:XP_006354975.1	SEG:seg	SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI000295637C
UniProt:M1APP0	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010579]

Coordinates

chr2:+:8632420..8635676

Molecular Weight (calculated)

35870.2 Da

IEP (calculated)

10.306

GRAVY (calculated)

-0.556

Length

332 amino acids

Sequence
(BLAST)

001: MGAGGFSYIQ HTVSKFDTLA GVAIRYGVEV ADIKRINGLV SDLQMFALKT LQIPLPGRHP PSPIISNGQG PSSSEQTSSS RRHSDIFDSF QSLKLKSSPQ
101: PKVSPAMSSL QGYYGLKPPD QKAASEGFEM AVYRKGGSHY LEDGPFYKSS SLSNPPLSLQ RKSKSVANGF MSENGVPANH LSTQDTRDNG SDRWFKKLVR
201: RRQKSETDFT RTPEMLLKED NSNSGWFSAV TGKGLALRPK SANRTLSGAD AEANSINPIP IGLGDSLLND STSVVRKSSS TSNLQDSDSG TLSSLWNLKP
301: DFQAISTAAI TKPIFDGLPK PITGRRNKAA LD

Best Arabidopsis Sequence Match ( AT5G08200.1 )
(BLAST)

001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD

Arabidopsis Description

At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.