Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61916 | Canola | cytosol | 69.52 | 68.49 |
| Bra008537.1-P | Field mustard | nucleus | 41.56 | 67.35 |
| CDY02209 | Canola | cytosol | 65.74 | 66.75 |
| Bra013019.1-P | Field mustard | cytosol | 65.49 | 66.67 |
| AT5G08200.1 | Thale cress | nucleus | 64.23 | 62.35 |
| PGSC0003DMT400027432 | Potato | cytosol | 40.81 | 48.8 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.04 | 45.45 |
| Solyc02g014090.2.1 | Tomato | nucleus | 41.06 | 45.4 |
| Solyc11g039960.1.1 | Tomato | nucleus | 39.04 | 45.32 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 37.03 | 44.95 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 43.83 | 43.72 |
| GSMUA_Achr11P... | Banana | nucleus | 36.52 | 40.85 |
| Os10t0485500-01 | Rice | cytosol | 37.53 | 40.49 |
| GSMUA_Achr11P... | Banana | nucleus | 36.78 | 40.33 |
| KRH29144 | Soybean | nucleus | 26.45 | 40.08 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 36.52 | 39.51 |
| EER94055 | Sorghum | nucleus | 35.01 | 38.61 |
| Zm00001d013983_P001 | Maize | cytosol | 34.76 | 38.44 |
| Zm00001d032656_P001 | Maize | nucleus | 34.51 | 38.16 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 34.26 | 38.1 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 33.75 | 37.33 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 29.97 | 34.59 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 28.46 | 34.56 |
| TraesCSU01G126200.1 | Wheat | cytosol | 29.47 | 33.72 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 27.71 | 33.54 |
| Zm00001d027325_P002 | Maize | cytosol | 24.94 | 33.0 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 28.97 | 32.67 |
| Os06t0729900-00 | Rice | nucleus | 26.7 | 32.32 |
| EER95660 | Sorghum | nucleus | 28.46 | 32.29 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 26.95 | 32.13 |
| Zm00001d036338_P001 | Maize | nucleus | 24.94 | 31.73 |
| Zm00001d048521_P001 | Maize | nucleus | 29.47 | 31.71 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 21.16 | 31.7 |
| EER89011 | Sorghum | nucleus | 25.94 | 30.29 |
| HORVU1Hr1G042690.2 | Barley | plastid | 33.25 | 30.14 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 27.2 | 28.2 |
Protein Annotations
| Gene3D:3.10.350.10 | MapMan:35.2 | EntrezGene:832377 | ProteinID:AED93125.1 | ArrayExpress:AT5G23130 | EnsemblPlantsGene:AT5G23130 |
| RefSeq:AT5G23130 | TAIR:AT5G23130 | RefSeq:AT5G23130-TAIR-G | EnsemblPlants:AT5G23130.1 | TAIR:AT5G23130.1 | EMBL:AY070377 |
| EMBL:AY113945 | Unigene:At.28379 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf |
| RefSeq:NP_197704.2 | PFAM:PF01476 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51782 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | UniProt:Q8VYP8 | SMART:SM00257 | SUPFAM:SSF54106 |
| UniParc:UPI00000A6285 | SEG:seg | : | : | : | : |
Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
Coordinates
chr5:+:7781172..7783620
Molecular Weight (calculated)
43208.7 Da
IEP (calculated)
10.306
GRAVY (calculated)
-0.605
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.