Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013983_P001 | Maize | cytosol | 87.19 | 87.19 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 69.64 | 69.64 |
| Os10t0485500-01 | Rice | cytosol | 70.75 | 69.02 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 66.57 | 66.95 |
| HORVU1Hr1G042690.2 | Barley | plastid | 61.84 | 50.68 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 43.73 | 48.01 |
| PGSC0003DMT400027432 | Potato | cytosol | 40.39 | 43.67 |
| Zm00001d048521_P001 | Maize | nucleus | 44.01 | 42.82 |
| GSMUA_Achr11P... | Banana | nucleus | 42.62 | 42.27 |
| GSMUA_Achr11P... | Banana | nucleus | 41.78 | 42.25 |
| Zm00001d027325_P002 | Maize | cytosol | 34.82 | 41.67 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 42.34 | 41.42 |
| Solyc02g014090.2.1 | Tomato | nucleus | 40.11 | 40.11 |
| PGSC0003DMT400050883 | Potato | nucleus | 37.88 | 39.88 |
| Solyc11g039960.1.1 | Tomato | nucleus | 37.88 | 39.77 |
| KRH38892 | Soybean | cytosol | 37.6 | 38.68 |
| KRH09395 | Soybean | nucleus | 37.6 | 38.14 |
| CDX78327 | Canola | nucleus | 37.88 | 36.27 |
| Bra005977.1-P | Field mustard | nucleus | 40.11 | 35.82 |
| CDY20605 | Canola | nucleus | 28.97 | 35.74 |
| KRG89129 | Soybean | nucleus | 35.1 | 35.59 |
| CDX81087 | Canola | nucleus | 37.33 | 35.54 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 22.28 | 34.78 |
| KRH40869 | Soybean | nucleus | 34.54 | 34.73 |
| AT5G23130.1 | Thale cress | nucleus | 38.16 | 34.51 |
| CDY21521 | Canola | nucleus | 40.11 | 34.45 |
| CDX69966 | Canola | nucleus | 39.83 | 34.05 |
| Bra028667.1-P | Field mustard | nucleus | 35.65 | 34.04 |
| Bra009329.1-P | Field mustard | nucleus | 39.55 | 33.97 |
| CDY40759 | Canola | nucleus | 35.38 | 33.78 |
| AT5G08200.1 | Thale cress | nucleus | 38.44 | 33.74 |
| CDY02209 | Canola | cytosol | 36.49 | 33.5 |
| Bra013019.1-P | Field mustard | cytosol | 35.93 | 33.08 |
| Zm00001d036338_P001 | Maize | nucleus | 28.41 | 32.69 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 36.21 | 32.66 |
| Bra008537.1-P | Field mustard | nucleus | 22.28 | 32.65 |
| CDY61916 | Canola | cytosol | 35.93 | 32.01 |
| KRH29144 | Soybean | nucleus | 22.56 | 30.92 |
| CDY44762 | Canola | nucleus | 34.82 | 29.14 |
Protein Annotations
| EnsemblPlants:Zm00001d032656_P001 | EnsemblPlants:Zm00001d032656_T001 | EnsemblPlantsGene:Zm00001d032656 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 | PFscan:PS51782 |
| ProteinID:ONM05648.1 | SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI000221A527 | UniProt:A0A1D6KSL3 |
| MapMan:35.2 | : | : | : | : | : |
Description
LysM domain containing protein
Coordinates
chr1:-:233337054..233340892
Molecular Weight (calculated)
39058.8 Da
IEP (calculated)
7.064
GRAVY (calculated)
-0.663
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPHLPKDP AFPRTNGSLD GGARDLGEIE EVGAAATVDV EQSPLQSSSP SASSPPAAAI SSCGQYMLHR VRKLDTLAGV AIKYGVEVAD IKRLNGLSAD
101: LQMFAHKTLQ IPLPGRHPPS SYQQNGSYES DDRECTPHRI QNDILDSILK TPKPKVSPAM SLLQGYYGLA PPPKRDQTSE GTEMAVYSKG KSAFLDVEPW
201: LEPPNSDPFP LQNRKTKSLT IGSLDGDTDE NGDSERFVRR RQKADGELLP REENGGDFLA SAGKGLALRP KSSSRPDMNK SQQNLFAMAE PLFGSGMQTV
301: RKSSSTPEFQ EPETSTSSSI WSASKWSINT DAFALPLPIP RFDNIPKPIA AWRNKAARD
101: LQMFAHKTLQ IPLPGRHPPS SYQQNGSYES DDRECTPHRI QNDILDSILK TPKPKVSPAM SLLQGYYGLA PPPKRDQTSE GTEMAVYSKG KSAFLDVEPW
201: LEPPNSDPFP LQNRKTKSLT IGSLDGDTDE NGDSERFVRR RQKADGELLP REENGGDFLA SAGKGLALRP KSSSRPDMNK SQQNLFAMAE PLFGSGMQTV
301: RKSSSTPEFQ EPETSTSSSI WSASKWSINT DAFALPLPIP RFDNIPKPIA AWRNKAARD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.