Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21521 | Canola | nucleus | 83.13 | 81.34 |
| Bra005977.1-P | Field mustard | nucleus | 78.24 | 79.6 |
| CDX69966 | Canola | nucleus | 80.68 | 78.57 |
| Bra009329.1-P | Field mustard | nucleus | 80.2 | 78.47 |
| CDY20605 | Canola | nucleus | 55.75 | 78.35 |
| CDX78327 | Canola | nucleus | 70.17 | 76.53 |
| CDX81087 | Canola | nucleus | 70.17 | 76.13 |
| Bra028667.1-P | Field mustard | nucleus | 68.22 | 74.2 |
| CDY40759 | Canola | nucleus | 68.22 | 74.2 |
| CDY44762 | Canola | nucleus | 71.64 | 68.3 |
| AT5G23130.1 | Thale cress | nucleus | 62.35 | 64.23 |
| PGSC0003DMT400027432 | Potato | cytosol | 41.32 | 50.9 |
| Solyc11g039960.1.1 | Tomato | nucleus | 40.59 | 48.54 |
| PGSC0003DMT400050883 | Potato | nucleus | 40.34 | 48.39 |
| Solyc02g014090.2.1 | Tomato | nucleus | 41.81 | 47.63 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 36.67 | 45.87 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 44.5 | 45.73 |
| GSMUA_Achr11P... | Banana | nucleus | 36.92 | 42.54 |
| GSMUA_Achr11P... | Banana | nucleus | 36.67 | 41.44 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 36.67 | 40.87 |
| KRH29144 | Soybean | nucleus | 24.94 | 38.93 |
| Zm00001d032656_P001 | Maize | nucleus | 33.74 | 38.44 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 33.5 | 38.38 |
| EER94055 | Sorghum | nucleus | 33.5 | 38.06 |
| Os10t0485500-01 | Rice | cytosol | 34.23 | 38.04 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 33.25 | 37.88 |
| Zm00001d013983_P001 | Maize | cytosol | 32.76 | 37.33 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 30.81 | 35.8 |
| TraesCSU01G126200.1 | Wheat | cytosol | 30.32 | 35.73 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 29.83 | 35.47 |
| Zm00001d027325_P002 | Maize | cytosol | 25.18 | 34.33 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 27.38 | 34.25 |
| Os06t0729900-00 | Rice | nucleus | 27.14 | 33.84 |
| EER95660 | Sorghum | nucleus | 28.85 | 33.71 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 21.76 | 33.58 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 26.89 | 33.54 |
| Zm00001d036338_P001 | Maize | nucleus | 24.69 | 32.37 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 25.92 | 31.83 |
| Zm00001d048521_P001 | Maize | nucleus | 28.36 | 31.44 |
| EER89011 | Sorghum | nucleus | 25.67 | 30.88 |
| HORVU1Hr1G042690.2 | Barley | plastid | 33.01 | 30.82 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 26.65 | 28.46 |
Protein Annotations
| Gene3D:3.10.350.10 | MapMan:35.2 | EntrezGene:830716 | UniProt:A0A178U927 | ProteinID:AED91270.1 | ArrayExpress:AT5G08200 |
| EnsemblPlantsGene:AT5G08200 | RefSeq:AT5G08200 | TAIR:AT5G08200 | RefSeq:AT5G08200-TAIR-G | EnsemblPlants:AT5G08200.1 | TAIR:AT5G08200.1 |
| EMBL:AY140035 | EMBL:BT008509 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf |
| RefSeq:NP_196437.2 | ProteinID:OAO90353.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51782 | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | UniProt:Q8L708 | UniParc:UPI00000A861B | SEG:seg |
Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
Coordinates
chr5:+:2637988..2640936
Molecular Weight (calculated)
44849.2 Da
IEP (calculated)
8.904
GRAVY (calculated)
-0.800
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.