Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- vacuole 1
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027432 | Potato | cytosol | 85.52 | 92.47 |
| Solyc11g039960.1.1 | Tomato | nucleus | 58.5 | 61.4 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 58.77 | 53.02 |
| KRH40869 | Soybean | nucleus | 52.09 | 52.38 |
| KRG89129 | Soybean | nucleus | 51.53 | 52.26 |
| CDY20605 | Canola | nucleus | 39.83 | 49.14 |
| GSMUA_Achr11P... | Banana | nucleus | 45.68 | 46.2 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 40.39 | 44.34 |
| CDX78327 | Canola | nucleus | 46.24 | 44.27 |
| Bra008537.1-P | Field mustard | nucleus | 29.53 | 43.27 |
| CDX81087 | Canola | nucleus | 45.13 | 42.97 |
| Bra028667.1-P | Field mustard | nucleus | 44.29 | 42.29 |
| CDY40759 | Canola | nucleus | 44.01 | 42.02 |
| KRH29144 | Soybean | nucleus | 30.64 | 41.98 |
| Bra009329.1-P | Field mustard | nucleus | 48.75 | 41.87 |
| AT5G08200.1 | Thale cress | nucleus | 47.63 | 41.81 |
| Bra005977.1-P | Field mustard | nucleus | 46.52 | 41.54 |
| CDX69966 | Canola | nucleus | 48.47 | 41.43 |
| CDY21521 | Canola | nucleus | 47.91 | 41.15 |
| AT5G23130.1 | Thale cress | nucleus | 45.4 | 41.06 |
| GSMUA_Achr11P... | Banana | nucleus | 41.23 | 40.88 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 39.0 | 40.7 |
| EER94055 | Sorghum | nucleus | 40.67 | 40.56 |
| CDY02209 | Canola | cytosol | 44.01 | 40.41 |
| Bra013019.1-P | Field mustard | cytosol | 43.73 | 40.26 |
| Zm00001d032656_P001 | Maize | nucleus | 40.11 | 40.11 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 40.95 | 40.05 |
| Os10t0485500-01 | Rice | cytosol | 40.95 | 39.95 |
| Zm00001d013983_P001 | Maize | cytosol | 39.83 | 39.83 |
| CDY61916 | Canola | cytosol | 44.57 | 39.7 |
| TraesCSU01G126200.1 | Wheat | cytosol | 37.88 | 39.19 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 37.05 | 37.78 |
| CDY44762 | Canola | nucleus | 44.57 | 37.3 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 37.05 | 37.25 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 37.05 | 37.05 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 33.15 | 36.39 |
| EER95660 | Sorghum | nucleus | 35.38 | 36.29 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 26.74 | 36.23 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 32.31 | 35.37 |
| Zm00001d027325_P002 | Maize | cytosol | 28.69 | 34.33 |
| Zm00001d048521_P001 | Maize | nucleus | 34.54 | 33.6 |
| Os06t0729900-00 | Rice | nucleus | 30.08 | 32.93 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 30.36 | 32.73 |
| EER89011 | Sorghum | nucleus | 30.36 | 32.06 |
| HORVU1Hr1G042690.2 | Barley | plastid | 38.16 | 31.28 |
| Zm00001d036338_P001 | Maize | nucleus | 26.46 | 30.45 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 31.48 | 29.5 |
Protein Annotations
| EnsemblPlants:Solyc02g014090.2.1 | EnsemblPlantsGene:Solyc02g014090.2 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 | PFscan:PS51257 | PFscan:PS51782 |
| SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI000276808C | UniProt:K4B4K8 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:+:15081699..15084685
Molecular Weight (calculated)
38499.9 Da
IEP (calculated)
9.460
GRAVY (calculated)
-0.554
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWEGRVNGG DCNLTSSSSS SGCTSMSAGG GTTYIQHTVS KFDTLAGVAI RYGVEVADIK RINGLVSDLQ MFALKTLHIP LPGRHPPSPI ISNGGQGPSS
101: SEQTSSSRRH SDMFDSFQSL KLKSSPQPKV SPAMSSLQGY YGLKPPDQKA ASEGFEMSVY CKGGSHYLED GPFYNSSSLS NRPLSLQRKS KSVANGFVTE
201: NGAPANHLST QDTRDNGSDR WFEKLVRRRQ KSETDFTRTP EMLLKEDNSN SGWFSAVTGK GLALRPKSAN RTLSGADAEA NSIYPIPIGL GDSLLNDSSS
301: VVRKSSSTSS LQDSDSSALS SLWNLKPDFQ AISTAAITKP IFDGLPKPIT GRRNKAALD
101: SEQTSSSRRH SDMFDSFQSL KLKSSPQPKV SPAMSSLQGY YGLKPPDQKA ASEGFEMSVY CKGGSHYLED GPFYNSSSLS NRPLSLQRKS KSVANGFVTE
201: NGAPANHLST QDTRDNGSDR WFEKLVRRRQ KSETDFTRTP EMLLKEDNSN SGWFSAVTGK GLALRPKSAN RTLSGADAEA NSIYPIPIGL GDSLLNDSSS
301: VVRKSSSTSS LQDSDSSALS SLWNLKPDFQ AISTAAITKP IFDGLPKPIT GRRNKAALD
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.