Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G560400.1 | Wheat | nucleus | 89.33 | 89.6 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 88.72 | 87.39 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 84.76 | 72.58 |
| Os06t0729900-00 | Rice | nucleus | 59.76 | 59.76 |
| EER89011 | Sorghum | nucleus | 61.28 | 59.12 |
| Zm00001d036338_P001 | Maize | nucleus | 50.0 | 52.56 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 34.15 | 34.25 |
| GSMUA_Achr11P... | Banana | nucleus | 36.89 | 34.08 |
| PGSC0003DMT400027432 | Potato | cytosol | 34.15 | 33.73 |
| Solyc02g014090.2.1 | Tomato | nucleus | 35.37 | 32.31 |
| GSMUA_Achr11P... | Banana | nucleus | 35.37 | 32.04 |
| KRH38892 | Soybean | cytosol | 33.84 | 31.81 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 35.06 | 31.34 |
| KRH09395 | Soybean | nucleus | 33.54 | 31.07 |
| PGSC0003DMT400050883 | Potato | nucleus | 31.4 | 30.21 |
| CDY20605 | Canola | nucleus | 26.52 | 29.9 |
| Solyc11g039960.1.1 | Tomato | nucleus | 31.1 | 29.82 |
| CDX81087 | Canola | nucleus | 34.15 | 29.71 |
| CDX78327 | Canola | nucleus | 33.84 | 29.6 |
| CDY02209 | Canola | cytosol | 34.76 | 29.16 |
| CDY40759 | Canola | nucleus | 33.23 | 28.99 |
| Bra005977.1-P | Field mustard | nucleus | 35.37 | 28.86 |
| Bra028667.1-P | Field mustard | nucleus | 32.93 | 28.72 |
| Bra013019.1-P | Field mustard | cytosol | 34.15 | 28.72 |
| KRH40869 | Soybean | nucleus | 31.1 | 28.57 |
| KRG89129 | Soybean | nucleus | 30.79 | 28.53 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 34.15 | 28.14 |
| AT5G23130.1 | Thale cress | nucleus | 33.54 | 27.71 |
| Bra009329.1-P | Field mustard | nucleus | 35.06 | 27.51 |
| CDY21521 | Canola | nucleus | 35.06 | 27.51 |
| CDX69966 | Canola | nucleus | 35.06 | 27.38 |
| CDY61916 | Canola | cytosol | 33.54 | 27.3 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 18.9 | 26.96 |
| Bra008537.1-P | Field mustard | nucleus | 20.12 | 26.94 |
| AT5G08200.1 | Thale cress | nucleus | 33.54 | 26.89 |
| KRH29144 | Soybean | nucleus | 20.73 | 25.95 |
| CDY44762 | Canola | nucleus | 32.62 | 24.94 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G549400.1 | EnsemblPlantsGene:TraesCS7D01G549400 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF12 | PFAM:PF01476 | PFscan:PS51782 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | TIGR:cd00118 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7D:+:634175562..634177828
Molecular Weight (calculated)
35013.9 Da
IEP (calculated)
8.453
GRAVY (calculated)
-0.636
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISHPLSDE FYGGPRGGGL GSALLLSPSS PPPPASCCSP VDDGQEDFLQ HQVSRMDTLA GIAIKYGVEI SDIKRANSLV TDSQMYAHKA LLIPLPGRPM
101: PSSVKLNGSS LRSKRAWAPN NQQNRDIMDS LDSVKSRQQQ SSLAMSSLQS YYGLSSERGD DMDCSTEMSL YSKGGSQGIG SEISPNASPP PDSTQSTGRG
201: NGATKEKQDG SIRRRQKVEA DTNDDLLSDS IKMIKSFLPR PVSSMRLSTD SSSPDSAAKS NGGSFLDGFK SVVRRSPSAP SFADSENGGG VSMWSSSKWT
301: FNHESFTRPL LDGLPKPSPG RRMKAALD
101: PSSVKLNGSS LRSKRAWAPN NQQNRDIMDS LDSVKSRQQQ SSLAMSSLQS YYGLSSERGD DMDCSTEMSL YSKGGSQGIG SEISPNASPP PDSTQSTGRG
201: NGATKEKQDG SIRRRQKVEA DTNDDLLSDS IKMIKSFLPR PVSSMRLSTD SSSPDSAAKS NGGSFLDGFK SVVRRSPSAP SFADSENGGG VSMWSSSKWT
301: FNHESFTRPL LDGLPKPSPG RRMKAALD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.