Factsheet for VIT_17s0053g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38892	Soybean	cytosol	50.87	33.52
KRH09395	Soybean	nucleus	48.7	31.64
VIT_01s0011g02130.t01	Wine grape	nucleus	54.35	31.41
GSMUA_Achr11P...	Banana	nucleus	43.04	27.35
GSMUA_Achr4P29860_001	Banana	nucleus	37.39	26.3
GSMUA_Achr2P10710_001	Banana	nucleus	41.74	26.16
GSMUA_Achr11P...	Banana	nucleus	40.0	25.92
Os10t0485500-01	Rice	cytosol	40.43	25.27
TraesCS1B01G177500.1	Wheat	nucleus	35.65	22.84
Zm00001d013983_P001	Maize	cytosol	35.22	22.56
TraesCS1A01G160800.1	Wheat	nucleus	34.78	22.41
Zm00001d032656_P001	Maize	nucleus	34.78	22.28
EER94055	Sorghum	nucleus	34.78	22.22
TraesCSU01G126200.1	Wheat	cytosol	32.17	21.33
TraesCS5A01G551300.1	Wheat	cytosol	31.74	21.22
TraesCS4B01G387000.1	Wheat	cytosol	31.74	20.74
TraesCS7A01G560400.1	Wheat	nucleus	28.7	20.18
EER95660	Sorghum	nucleus	30.43	20.0
Os06t0729900-00	Rice	nucleus	27.39	19.21
TraesCS7D01G549400.1	Wheat	nucleus	26.96	18.9
EER89011	Sorghum	nucleus	26.96	18.24
Zm00001d048521_P001	Maize	nucleus	29.13	18.16
HORVU1Hr1G042690.2	Barley	plastid	33.91	17.81
TraesCS7B01G486800.1	Wheat	nucleus	25.65	17.72
Zm00001d036338_P001	Maize	nucleus	23.48	17.31
HORVU7Hr1G120120.1	Barley	cytosol	27.39	16.45
Zm00001d027325_P002	Maize	cytosol	19.57	15.0
HORVU4Hr1G089910.8	Barley	cytosol	13.91	12.08
VIT_17s0053g00240.t01	Wine grape	cytosol	1.74	3.54

Protein Annotations

ArrayExpress:VIT_17s0053g00210	EMBL:AM426499	EMBL:FN596258	EnsemblPlants:VIT_17s0053g00210.t01	EnsemblPlantsGene:VIT_17s0053g00210	EntrezGene:100266699
EntrezGene:LOC100266699	PANTHER:PTHR20932	PANTHER:PTHR20932:SF11	ProteinID:CAN80053	ProteinID:CAN80053.1	ProteinID:CCB58785
ProteinID:CCB58785.1	RefSeq:XP_002267776	RefSeq:XP_002267776.1	unigene:Vvi.23918	UniParc:UPI0002109F40	UniProt:F6HVS2
wikigene:100266699	wikigene:LOC100266699	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr17:-:14702307..14703554

Molecular Weight (calculated)

24289.1 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.707

Length

230 amino acids

Sequence
(BLAST)

001: MSTLQNYYGL KSQDKNQNGG AEGMEMTVYG AGKPHGFDFG LLPKALPISE PSSNQDHKSR NLANGFFAEN GTVAADVPIS EAGDGEGERS NEKSVRRRQK
101: SEADSGAGPE RLLKEENSGG SSGFSAITGK GLALRPKSAS RTALSADAES SWLNAIPVGL GDSIMPEGLT SVRKSSSTPS LQEHDQNNSS SSVWPTSWNL
201: KPDLQALSAR PIFDGLPKPI TGRKNKAALD

Best Arabidopsis Sequence Match ( AT5G23130.1 )
(BLAST)

001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD

Arabidopsis Description

Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.