Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G549400.1 | Wheat | nucleus | 72.58 | 84.76 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 72.32 | 84.71 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 73.37 | 84.38 |
| Os06t0729900-00 | Rice | nucleus | 51.96 | 60.67 |
| EER89011 | Sorghum | nucleus | 52.74 | 59.41 |
| Zm00001d036338_P001 | Maize | nucleus | 43.08 | 52.88 |
| GSMUA_Achr11P... | Banana | nucleus | 31.85 | 34.37 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 28.72 | 33.64 |
| GSMUA_Achr11P... | Banana | nucleus | 31.33 | 33.15 |
| PGSC0003DMT400027432 | Potato | cytosol | 28.46 | 32.83 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 30.29 | 31.61 |
| Solyc02g014090.2.1 | Tomato | nucleus | 29.5 | 31.48 |
| PGSC0003DMT400050883 | Potato | nucleus | 27.68 | 31.09 |
| Solyc11g039960.1.1 | Tomato | nucleus | 27.42 | 30.7 |
| KRH09395 | Soybean | nucleus | 28.2 | 30.51 |
| KRH38892 | Soybean | cytosol | 27.68 | 30.37 |
| CDX78327 | Canola | nucleus | 28.98 | 29.6 |
| CDX81087 | Canola | nucleus | 28.98 | 29.44 |
| Bra013019.1-P | Field mustard | cytosol | 29.77 | 29.23 |
| CDY20605 | Canola | nucleus | 22.19 | 29.21 |
| CDY02209 | Canola | cytosol | 29.24 | 28.64 |
| Bra005977.1-P | Field mustard | nucleus | 29.77 | 28.36 |
| CDY40759 | Canola | nucleus | 27.68 | 28.19 |
| KRH40869 | Soybean | nucleus | 26.11 | 28.01 |
| Bra028667.1-P | Field mustard | nucleus | 27.42 | 27.93 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 28.72 | 27.64 |
| KRG89129 | Soybean | nucleus | 25.33 | 27.4 |
| VIT_17s0053g00210.t01 | Wine grape | cytosol | 16.45 | 27.39 |
| CDY61916 | Canola | cytosol | 28.72 | 27.3 |
| AT5G23130.1 | Thale cress | nucleus | 28.2 | 27.2 |
| CDY21521 | Canola | nucleus | 29.5 | 27.03 |
| Bra008537.1-P | Field mustard | nucleus | 17.23 | 26.94 |
| Bra009329.1-P | Field mustard | nucleus | 29.24 | 26.79 |
| HORVU1Hr1G042690.2 | Barley | plastid | 30.55 | 26.71 |
| CDX69966 | Canola | nucleus | 29.24 | 26.67 |
| AT5G08200.1 | Thale cress | nucleus | 28.46 | 26.65 |
| KRH29144 | Soybean | nucleus | 17.75 | 25.95 |
| CDY44762 | Canola | nucleus | 27.94 | 24.94 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 16.97 | 24.53 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G120120.1 | EnsemblPlantsGene:HORVU7Hr1G120120 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF12 | PFAM:PF01476 | PFscan:PS51782 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI000B4676CC | UniProt:A0A287Y0B4 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr7H:+:650884266..650886902
Molecular Weight (calculated)
41109.2 Da
IEP (calculated)
9.676
GRAVY (calculated)
-0.607
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: HPTTLTTYPS PPHFSSRPPG RDGRDLPALR DLFDLGPPTT SGGFFSWFVG MGISHPLSDE FYGGPRGGLG LXGALMLSPD RSPPSSPPSC CSPVHGQEGF
101: LQHQVSRMDT LAGIAIKYGV EISDIKRANS LVTDSQMYAH KALLIPLPGR PMPSSVKLNG SSLRTKRAWA PNNQQNNQQN RDIVTSPDSE KTRQQQSSLA
201: MSSLQSYYGL SSQGGDDMDL STEMSLYSKG SSQGIGSEIL PISSSLPDST QSTGRGNGAA KEKQDGSIRR RQKVESDTQD DLLSDSIKMI KSFLPRPVSS
301: MRLSTDTSSP DTSAKNNGVS FLNGLKSVVR KSPSAPSFAD SENNGVSMWS SSKWTFNHES FTRPLLDGLP KPAAGRRMKA ALD
101: LQHQVSRMDT LAGIAIKYGV EISDIKRANS LVTDSQMYAH KALLIPLPGR PMPSSVKLNG SSLRTKRAWA PNNQQNNQQN RDIVTSPDSE KTRQQQSSLA
201: MSSLQSYYGL SSQGGDDMDL STEMSLYSKG SSQGIGSEIL PISSSLPDST QSTGRGNGAA KEKQDGSIRR RQKVESDTQD DLLSDSIKMI KSFLPRPVSS
301: MRLSTDTSSP DTSAKNNGVS FLNGLKSVVR KSPSAPSFAD SENNGVSMWS SSKWTFNHES FTRPLLDGLP KPAAGRRMKA ALD
001: MLTERGRRIS GFNGSFEFSN RKFRGYGFVD RSQGFHERSP SRSCSVSKIL RITPPTSSPP SSASTCAGYI EHRVSKFDTL AGIAIKYGVE VADITKLNGL
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
101: VTDLQMFALE SLRIPLPGRH PPSPCLSNGS LNHGEDWSEQ ASSSASNGNH QDVFDSFQSL RLNHSEKKIS PAMNSLQGYY GLKPKNRRAS EGFGMAVYKN
201: EASQLQDNDQ YLTPFPATST PLSHHRKSRS LVDAVIAEVN QSPNPSKAGG GEVNSTDKPM RRRQKSEADF SSRAPELLLK EENRSSSGAF SAIAGKNLAL
301: RSKASSRANL SAETRHLNSI PINLMDAPVG DSFSSVRKSV SASSLQEPNC NSNGSSLWPT SKWTLKPELL TQVAMASSIF DGLPKPLTGR RNKKAVD
Arabidopsis Description
Peptidoglycan-binding LysM domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.