Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g039960.1.1 | Tomato | nucleus | 98.24 | 97.95 |
| PGSC0003DMT400027432 | Potato | cytosol | 61.88 | 63.55 |
| CDY20605 | Canola | nucleus | 40.76 | 47.77 |
| KRG89129 | Soybean | nucleus | 47.21 | 45.48 |
| KRH40869 | Soybean | nucleus | 47.51 | 45.38 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 52.2 | 44.72 |
| CDX78327 | Canola | nucleus | 46.92 | 42.67 |
| CDX81087 | Canola | nucleus | 46.63 | 42.18 |
| Bra008537.1-P | Field mustard | nucleus | 30.21 | 42.04 |
| Bra005977.1-P | Field mustard | nucleus | 48.39 | 41.04 |
| AT5G08200.1 | Thale cress | nucleus | 48.39 | 40.34 |
| CDY21521 | Canola | nucleus | 49.27 | 40.19 |
| Bra009329.1-P | Field mustard | nucleus | 49.27 | 40.19 |
| CDX69966 | Canola | nucleus | 49.27 | 40.0 |
| Bra028667.1-P | Field mustard | nucleus | 43.99 | 39.89 |
| CDY40759 | Canola | nucleus | 43.99 | 39.89 |
| KRH29144 | Soybean | nucleus | 30.5 | 39.69 |
| GSMUA_Achr11P... | Banana | nucleus | 41.06 | 39.44 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 41.35 | 39.28 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 41.06 | 39.22 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 37.54 | 39.14 |
| AT5G23130.1 | Thale cress | nucleus | 45.45 | 39.04 |
| GSMUA_Achr11P... | Banana | nucleus | 41.35 | 38.95 |
| Os10t0485500-01 | Rice | cytosol | 41.64 | 38.59 |
| Bra013019.1-P | Field mustard | cytosol | 43.7 | 38.21 |
| CDY02209 | Canola | cytosol | 43.7 | 38.11 |
| EER94055 | Sorghum | nucleus | 40.18 | 38.06 |
| Zm00001d032656_P001 | Maize | nucleus | 39.88 | 37.88 |
| Zm00001d013983_P001 | Maize | cytosol | 39.3 | 37.33 |
| CDY61916 | Canola | cytosol | 43.7 | 36.97 |
| CDY44762 | Canola | nucleus | 44.28 | 35.2 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 37.54 | 34.88 |
| TraesCSU01G126200.1 | Wheat | cytosol | 35.48 | 34.87 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 34.9 | 34.59 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 34.6 | 33.52 |
| EER95660 | Sorghum | nucleus | 34.31 | 33.43 |
| Os06t0729900-00 | Rice | nucleus | 31.09 | 32.32 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 30.79 | 32.11 |
| Zm00001d027325_P002 | Maize | cytosol | 28.15 | 32.0 |
| HORVU1Hr1G042690.2 | Barley | plastid | 41.06 | 31.96 |
| EER89011 | Sorghum | nucleus | 31.67 | 31.76 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 30.21 | 31.4 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 24.34 | 31.32 |
| Zm00001d048521_P001 | Maize | nucleus | 33.14 | 30.62 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 28.74 | 29.43 |
| Zm00001d036338_P001 | Maize | nucleus | 25.51 | 27.88 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 31.09 | 27.68 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400050883 | EnsemblPlantsGene:PGSC0003DMG400019763 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 | PFscan:PS51782 | PGSC:PGSC0003DMG400019763 |
| SEG:seg | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0002966FE2 | UniProt:M1BR08 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019763]
Coordinates
chr11:+:20770923..20777450
Molecular Weight (calculated)
36634.0 Da
IEP (calculated)
9.917
GRAVY (calculated)
-0.588
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSPPPQSD DRGGGSNYIQ HQVTKFDTLP GVAIRYGVEV SDIKKLNGLV SDLQMFARKT LQIPLPGRHP PSPAVSNGQD TQGPSSSEQI PPSNQYPDLF
101: GSFQSLKLKS SSQQRVSPAM SSLLGYQGPK LADQKVASEG FEMAVYRKGV SHYLEDGPFV MSTPHSNQPL GLHRKCKSVA NDMSENGVGS AENGSNRLFE
201: KLSRRRQKSE ADFSSRTPEV LLKEDNSSGS GFSAAAGKGL ALRPKSASRI LLGPDAEASS INPITMLLND SFLNDSASVR KSSSTPSLQE SDSSTLSSLW
301: TTSKWNLKPD FQAISTAAIT KPIFDSLQKP TGPRKSKTAV D
101: GSFQSLKLKS SSQQRVSPAM SSLLGYQGPK LADQKVASEG FEMAVYRKGV SHYLEDGPFV MSTPHSNQPL GLHRKCKSVA NDMSENGVGS AENGSNRLFE
201: KLSRRRQKSE ADFSSRTPEV LLKEDNSSGS GFSAAAGKGL ALRPKSASRI LLGPDAEASS INPITMLLND SFLNDSASVR KSSSTPSLQE SDSSTLSSLW
301: TTSKWNLKPD FQAISTAAIT KPIFDSLQKP TGPRKSKTAV D
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.