Factsheet for Bra005977.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78327	Canola	nucleus	87.31	93.6
CDY20605	Canola	nucleus	66.42	91.75
CDX81087	Canola	nucleus	85.82	91.51
Bra009329.1-P	Field mustard	nucleus	82.09	78.95
AT5G08200.1	Thale cress	nucleus	79.6	78.24
Bra028667.1-P	Field mustard	nucleus	73.13	78.19
Bra008537.1-P	Field mustard	nucleus	36.82	60.41
Bra013019.1-P	Field mustard	cytosol	57.46	59.23
PGSC0003DMT400027432	Potato	cytosol	41.54	50.3
Solyc11g039960.1.1	Tomato	nucleus	41.29	48.54
PGSC0003DMT400050883	Potato	nucleus	41.04	48.39
GSMUA_Achr4P29860_001	Banana	nucleus	38.81	47.71
Solyc02g014090.2.1	Tomato	nucleus	41.54	46.52
VIT_01s0011g02130.t01	Wine grape	nucleus	45.52	45.98
GSMUA_Achr11P...	Banana	nucleus	38.81	43.09
GSMUA_Achr11P...	Banana	nucleus	37.56	42.54
GSMUA_Achr2P10710_001	Banana	nucleus	38.81	42.51
Zm00001d032656_P001	Maize	nucleus	35.82	40.11
KRH29144	Soybean	nucleus	25.87	39.69
TraesCS1B01G177500.1	Wheat	nucleus	35.32	39.55
TraesCS1A01G160800.1	Wheat	nucleus	35.07	39.5
EER94055	Sorghum	nucleus	34.83	38.89
Os10t0485500-01	Rice	cytosol	35.57	38.86
Zm00001d013983_P001	Maize	cytosol	33.83	37.88
TraesCS4B01G387000.1	Wheat	cytosol	32.59	37.22
TraesCSU01G126200.1	Wheat	cytosol	31.59	36.6
Zm00001d027325_P002	Maize	cytosol	26.62	35.67
TraesCS5A01G551300.1	Wheat	cytosol	30.35	35.47
TraesCS7D01G549400.1	Wheat	nucleus	28.86	35.37
TraesCS7A01G560400.1	Wheat	nucleus	28.61	35.17
TraesCS7B01G486800.1	Wheat	nucleus	27.86	33.63
EER95660	Sorghum	nucleus	29.1	33.43
Os06t0729900-00	Rice	nucleus	27.11	33.23
HORVU4Hr1G089910.8	Barley	cytosol	21.89	33.21
Zm00001d048521_P001	Maize	nucleus	29.85	32.52
HORVU1Hr1G042690.2	Barley	plastid	35.07	32.19
Zm00001d036338_P001	Maize	nucleus	24.63	31.73
EER89011	Sorghum	nucleus	26.37	31.18
HORVU7Hr1G120120.1	Barley	cytosol	28.36	29.77

Protein Annotations

EnsemblPlants:Bra005977.1	EnsemblPlants:Bra005977.1-P	EnsemblPlantsGene:Bra005977	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR20932	PANTHER:PTHR20932:SF29	PFscan:PS51782	SEG:seg
SMART:SM00257	SUPFAM:SSF54106	UniParc:UPI000253F742	UniProt:M4CP39	MapMan:35.2	:

Description

AT5G08200 (E=2e-166) | peptidoglycan-binding LysM domain-containing protein

Coordinates

chrA03:+:1473146..1474887

Molecular Weight (calculated)

43630.9 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.717

Length

402 amino acids

Sequence
(BLAST)

001: MFMDRERRLS ARNGTRTPPE YTNGKFRDDN NGFYGGGFLD RSEKSPSRSN ILRIPSPTSS PPPPSGSSPE RGYIEHRVSK FDTLAGIAIK YGVEVADVKK
101: MNGLVTDLQM FALKSLQIPL PGRHPPSPCL SNGSLNHGEG CSCHELEPPN HSNGDVFDSF QSLRLKSSEK KVSPAMNSLQ GYYGLKPANR TVSVGGSLEM
201: GNYKSENNGD SQYLRPFPST NTPLNHHRKS RSLVNALLEE INQSPDNTTH QEQSSDKFIR GRRKSVADFS SRTPELLLKE ENSSSNGGFL SIAGKGLALR
301: SKASSRTNLS SAESETTSNF NPVPINLMDA SVSDSFSSVR KSSSASSLQD PDGSNGSSSL SLWPTSKWSL KPDLLTPAAI TSSIFDGLPK PLTGRRNKAA
401: MD

Best Arabidopsis Sequence Match ( AT5G08200.1 )
(BLAST)

001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD

Arabidopsis Description

At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.