Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40759 | Canola | nucleus | 98.14 | 98.14 |
| CDY44762 | Canola | nucleus | 90.96 | 79.72 |
| Bra005977.1-P | Field mustard | nucleus | 78.19 | 73.13 |
| Bra009329.1-P | Field mustard | nucleus | 76.6 | 68.9 |
| AT5G08200.1 | Thale cress | nucleus | 74.2 | 68.22 |
| Bra013019.1-P | Field mustard | cytosol | 53.99 | 52.05 |
| Bra008537.1-P | Field mustard | nucleus | 32.71 | 50.2 |
| PGSC0003DMT400027432 | Potato | cytosol | 42.02 | 47.59 |
| Solyc02g014090.2.1 | Tomato | nucleus | 42.29 | 44.29 |
| Solyc11g039960.1.1 | Tomato | nucleus | 40.16 | 44.15 |
| PGSC0003DMT400050883 | Potato | nucleus | 39.89 | 43.99 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 35.9 | 41.28 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 42.02 | 39.7 |
| GSMUA_Achr11P... | Banana | nucleus | 35.64 | 37.75 |
| GSMUA_Achr11P... | Banana | nucleus | 35.9 | 37.29 |
| KRH29144 | Soybean | nucleus | 25.53 | 36.64 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 35.64 | 36.51 |
| Zm00001d032656_P001 | Maize | nucleus | 34.04 | 35.65 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 33.78 | 35.57 |
| EER94055 | Sorghum | nucleus | 34.04 | 35.56 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 33.78 | 35.38 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 32.98 | 35.23 |
| Zm00001d013983_P001 | Maize | cytosol | 33.24 | 34.82 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 24.47 | 34.72 |
| TraesCSU01G126200.1 | Wheat | cytosol | 31.91 | 34.58 |
| Os10t0485500-01 | Rice | cytosol | 33.78 | 34.51 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 30.85 | 33.72 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 28.72 | 32.93 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 28.19 | 32.42 |
| Zm00001d027325_P002 | Maize | cytosol | 25.0 | 31.33 |
| EER95660 | Sorghum | nucleus | 28.99 | 31.14 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 27.39 | 30.93 |
| Os06t0729900-00 | Rice | nucleus | 26.6 | 30.49 |
| Zm00001d036338_P001 | Maize | nucleus | 25.0 | 30.13 |
| HORVU1Hr1G042690.2 | Barley | plastid | 34.31 | 29.45 |
| EER89011 | Sorghum | nucleus | 26.6 | 29.41 |
| Zm00001d048521_P001 | Maize | nucleus | 28.46 | 29.0 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 27.93 | 27.42 |
Protein Annotations
| EnsemblPlants:Bra028667.1 | EnsemblPlants:Bra028667.1-P | EnsemblPlantsGene:Bra028667 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFscan:PS51782 | SEG:seg |
| UniParc:UPI00025432BC | UniProt:M4EIQ2 | MapMan:35.2 | : | : | : |
Description
AT5G23130 (E=4e-066) | peptidoglycan-binding LysM domain-containing protein
Coordinates
chrA02:+:2632285..2634190
Molecular Weight (calculated)
40935.9 Da
IEP (calculated)
10.044
GRAVY (calculated)
-0.706
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMDRRERRL SNRNGTPPEY TNGKFRDDKN GYGGGFFLDP SSPNILRIPS PTSSSPPPRS SSPDRGYIEH RVSKFDTLAG VAIKYGVEVG DVKKMNGLVT
101: DLQMFALKSL RIPLPGRHPP SPCLSIGSLH HGEGCSCHEL EPQNDTNSDA FDSFQSLRLK SSKKKGYYGL KPPIRTVSVG GSLEMGAYKT ESNGDSQYLR
201: PFPSTNTPLN HHRKSRSLVN ALLEEFNQSS QEPSSTKFMR RRQKSEADFT SRTPELMLKE ESTSSSNGGF LSSVGGKGLA LRSKASSRTS LSSAESETWS
301: FNPVPMNLMD ALVSDSFASV RKSSSASSLQ DPDGNSNNGS SSLSLWSTST PAAITSSIFD GLPKPLTGRR NKTAMD
101: DLQMFALKSL RIPLPGRHPP SPCLSIGSLH HGEGCSCHEL EPQNDTNSDA FDSFQSLRLK SSKKKGYYGL KPPIRTVSVG GSLEMGAYKT ESNGDSQYLR
201: PFPSTNTPLN HHRKSRSLVN ALLEEFNQSS QEPSSTKFMR RRQKSEADFT SRTPELMLKE ESTSSSNGGF LSSVGGKGLA LRSKASSRTS LSSAESETWS
301: FNPVPMNLMD ALVSDSFASV RKSSSASSLQ DPDGNSNNGS SSLSLWSTST PAAITSSIFD GLPKPLTGRR NKTAMD
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.