Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050883 | Potato | nucleus | 97.95 | 98.24 |
| Solyc02g014090.2.1 | Tomato | nucleus | 61.4 | 58.5 |
| CDY20605 | Canola | nucleus | 40.35 | 47.42 |
| KRH40869 | Soybean | nucleus | 47.37 | 45.38 |
| VIT_01s0011g02130.t01 | Wine grape | nucleus | 52.34 | 44.97 |
| KRG89129 | Soybean | nucleus | 46.49 | 44.92 |
| CDX78327 | Canola | nucleus | 47.08 | 42.93 |
| CDX81087 | Canola | nucleus | 46.78 | 42.44 |
| Bra008537.1-P | Field mustard | nucleus | 29.82 | 41.63 |
| Bra005977.1-P | Field mustard | nucleus | 48.54 | 41.29 |
| AT5G08200.1 | Thale cress | nucleus | 48.54 | 40.59 |
| CDY21521 | Canola | nucleus | 49.12 | 40.19 |
| Bra009329.1-P | Field mustard | nucleus | 49.12 | 40.19 |
| Bra028667.1-P | Field mustard | nucleus | 44.15 | 40.16 |
| CDY40759 | Canola | nucleus | 44.15 | 40.16 |
| CDX69966 | Canola | nucleus | 49.12 | 40.0 |
| GSMUA_Achr11P... | Banana | nucleus | 41.23 | 39.72 |
| KRH29144 | Soybean | nucleus | 30.41 | 39.69 |
| TraesCS1B01G177500.1 | Wheat | nucleus | 41.52 | 39.55 |
| GSMUA_Achr11P... | Banana | nucleus | 41.52 | 39.23 |
| TraesCS1A01G160800.1 | Wheat | nucleus | 40.94 | 39.22 |
| GSMUA_Achr4P29860_001 | Banana | nucleus | 37.43 | 39.14 |
| AT5G23130.1 | Thale cress | nucleus | 45.32 | 39.04 |
| Os10t0485500-01 | Rice | cytosol | 41.81 | 38.86 |
| EER94055 | Sorghum | nucleus | 40.35 | 38.33 |
| Bra013019.1-P | Field mustard | cytosol | 43.57 | 38.21 |
| CDY02209 | Canola | cytosol | 43.57 | 38.11 |
| Zm00001d032656_P001 | Maize | nucleus | 39.77 | 37.88 |
| Zm00001d013983_P001 | Maize | cytosol | 39.47 | 37.6 |
| CDY61916 | Canola | cytosol | 43.86 | 37.22 |
| CDY44762 | Canola | nucleus | 44.15 | 35.2 |
| TraesCSU01G126200.1 | Wheat | cytosol | 35.67 | 35.16 |
| TraesCS5A01G551300.1 | Wheat | cytosol | 35.09 | 34.88 |
| GSMUA_Achr2P10710_001 | Banana | nucleus | 37.43 | 34.88 |
| TraesCS4B01G387000.1 | Wheat | cytosol | 34.8 | 33.81 |
| EER95660 | Sorghum | nucleus | 34.5 | 33.71 |
| Zm00001d027325_P002 | Maize | cytosol | 28.95 | 33.0 |
| HORVU1Hr1G042690.2 | Barley | plastid | 41.23 | 32.19 |
| Os06t0729900-00 | Rice | nucleus | 30.7 | 32.01 |
| TraesCS7A01G560400.1 | Wheat | nucleus | 30.41 | 31.8 |
| HORVU4Hr1G089910.8 | Barley | cytosol | 24.56 | 31.7 |
| EER89011 | Sorghum | nucleus | 30.99 | 31.18 |
| Zm00001d048521_P001 | Maize | nucleus | 33.63 | 31.17 |
| TraesCS7D01G549400.1 | Wheat | nucleus | 29.82 | 31.1 |
| TraesCS7B01G486800.1 | Wheat | nucleus | 28.36 | 29.13 |
| HORVU7Hr1G120120.1 | Barley | cytosol | 30.7 | 27.42 |
| Zm00001d036338_P001 | Maize | nucleus | 24.85 | 27.24 |
Protein Annotations
| EnsemblPlants:Solyc11g039960.1.1 | EnsemblPlantsGene:Solyc11g039960.1 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR036779 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | PANTHER:PTHR20932 | PANTHER:PTHR20932:SF29 | PFAM:PF01476 | PFscan:PS51782 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0002769E11 | UniProt:K4D7X2 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr11:+:40412993..40417136
Molecular Weight (calculated)
36750.3 Da
IEP (calculated)
10.100
GRAVY (calculated)
-0.563
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTSSPPRQS DDGGGGSNYI QHQVTKFDTL PGVAIRYGVE VSDIKKLNGL VSDLQMFARK TLQIPLPGRH PPSPAVSNGQ DTQGPSSSEQ IPPRNKYPNL
101: FGSFQSLKLK SSSQQRVSPA MSSLLGYQGP KLADQKVASE GFEMAVYRKG VSHYLEDGPF VMSTPHSNQP LGLHRKCKSV ANDMSENGVG SAENGSNILF
201: EKLSRRRQKS EADFSSRTPE VLLKEDNSSG SGFSAAAGKG LALRPKSASR ILLGPDAEAS SINPITMLLN DSFLNDSASV RKSSSTPSLQ ESDSSTLSSL
301: WTTSKWNLKP DFQAISTAAI TKPIFDSLQK PTGPRKSKTA VD
101: FGSFQSLKLK SSSQQRVSPA MSSLLGYQGP KLADQKVASE GFEMAVYRKG VSHYLEDGPF VMSTPHSNQP LGLHRKCKSV ANDMSENGVG SAENGSNILF
201: EKLSRRRQKS EADFSSRTPE VLLKEDNSSG SGFSAAAGKG LALRPKSASR ILLGPDAEAS SINPITMLLN DSFLNDSASV RKSSSTPSLQ ESDSSTLSSL
301: WTTSKWNLKP DFQAISTAAI TKPIFDSLQK PTGPRKSKTA VD
001: MFMDRERRSS GRNGTPEYSN GKFRDDNGFG FLDRLENCRE KSPPRSKILR IPSPTSSPPP SSSSPPFHGS NSPDRGYIEH RISKFDTLAG VAIKYGVEVA
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
101: DVKKMNNLVT DLQMFALKSL QIPLPGRHPP SPCLSNGSLN HGEGCSCHEP ESPNHSEQEV FDSFQSLRLK SSEKKVSPAM YSLQGYYGLK PADRTVSDGG
201: CFEMGNYKTE TSHHIFNNGD NGYLRPFPST NTPLNHHRKS RSLVNALIEE VNQSPDNNTQ EPTSDKFMRR RQKSEADFSS RTPELVLKEE NGSSNGGFLS
301: IAGKGLALRS KASSRTNLAA ESENGNFNPV SMNLMDAPVS DSFSSVRKSS SASSLQDPDG NSNNGSLSLW PTSKWSLKPD LLTPAAITSS IFDGLPKPLT
401: GRRNKTALD
Arabidopsis Description
At5g08200 [Source:UniProtKB/TrEMBL;Acc:Q8L708]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.