Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 96.46 | 96.95 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 91.41 | 91.41 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 87.37 | 64.79 |
| Zm00001d018530_P001 | Maize | plastid | 62.63 | 59.9 |
| Os02t0828566-01 | Rice | nucleus | 70.2 | 58.9 |
| EES07800 | Sorghum | plastid | 71.21 | 58.02 |
| Bra029366.1-P | Field mustard | cytosol | 50.0 | 56.25 |
| CDX87179 | Canola | nucleus | 54.04 | 49.77 |
| CDY16842 | Canola | nucleus | 54.04 | 49.77 |
| Bra026506.1-P | Field mustard | cytosol, mitochondrion, nucleus | 53.54 | 49.07 |
| CDY40752 | Canola | cytosol | 42.42 | 47.46 |
| CDX81094 | Canola | nucleus | 42.93 | 47.22 |
| CDY44770 | Canola | cytosol | 53.03 | 46.67 |
| CDX78335 | Canola | nucleus | 41.41 | 46.59 |
| KRH40904 | Soybean | nucleus | 54.55 | 45.19 |
| KRH36141 | Soybean | nucleus | 56.06 | 45.12 |
| KRH40902 | Soybean | nucleus | 54.55 | 45.0 |
| Bra005984.1-P | Field mustard | nucleus | 53.03 | 44.87 |
| KRG89108 | Soybean | nucleus, plastid | 52.53 | 44.83 |
| Bra028662.1-P | Field mustard | nucleus | 51.52 | 44.54 |
| AT5G08330.1 | Thale cress | nucleus | 53.54 | 44.35 |
| Bra009338.1-P | Field mustard | nucleus | 52.53 | 44.07 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 56.06 | 43.53 |
| CDY45760 | Canola | nucleus | 53.03 | 43.39 |
| CDY21536 | Canola | nucleus | 51.52 | 43.22 |
| AT5G23280.1 | Thale cress | nucleus | 54.55 | 43.2 |
| CDY46951 | Canola | nucleus | 50.0 | 43.04 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 53.03 | 43.03 |
| Bra009667.1-P | Field mustard | nucleus | 54.04 | 42.8 |
| CDX88010 | Canola | nucleus | 54.04 | 42.29 |
| CDY40799 | Canola | nucleus | 48.99 | 42.17 |
| Solyc01g008230.2.1 | Tomato | nucleus | 52.53 | 41.77 |
| KRG90619 | Soybean | nucleus | 50.51 | 41.32 |
| Solyc04g009180.1.1 | Tomato | nucleus | 54.55 | 40.6 |
| TraesCS6B01G262600.1 | Wheat | plastid | 36.36 | 36.18 |
| TraesCS2B01G392900.1 | Wheat | cytosol | 36.87 | 29.08 |
| TraesCS2B01G062900.1 | Wheat | plastid | 22.73 | 28.12 |
| PGSC0003DMT400042166 | Potato | cytosol | 52.53 | 23.21 |
| TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 35.86 | 18.64 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 32.83 | 17.47 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 33.33 | 16.42 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 26.26 | 14.9 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 25.25 | 14.75 |
| TraesCS5B01G117100.1 | Wheat | nucleus | 30.3 | 14.39 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 25.25 | 14.33 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G462100.1 | EnsemblPlantsGene:TraesCS6B01G462100 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF7 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr6B:+:715448937..715449533
Molecular Weight (calculated)
20244.8 Da
IEP (calculated)
7.136
GRAVY (calculated)
-0.233
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GSGTTPASFS TSSPSSLRPP GAPHPQHPHA HAQPLAVSPH HHHLPHAAPF ILGKRVRDDD
101: GGGNGNGNGQ AAAVTAAMAP APGFWALPAR GDFGQLWSFA PPPEMMAAAP AMAGEASAAR VGNYLPMAQA NLNLLASFSG GPGGAGQATG RAEEETAH
101: GGGNGNGNGQ AAAVTAAMAP APGFWALPAR GDFGQLWSFA PPPEMMAAAP AMAGEASAAR VGNYLPMAQA NLNLLASFSG GPGGAGQATG RAEEETAH
001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Arabidopsis Description
TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.