Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G122400.1 | Wheat | nucleus | 94.48 | 94.48 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 54.6 | 53.61 |
| AT1G60830.2 | Thale cress | nucleus | 27.61 | 40.54 |
| CDY55407 | Canola | nucleus | 26.99 | 39.29 |
| CDY40492 | Canola | nucleus | 26.99 | 29.33 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 26.99 | 23.53 |
| Bra040973.1-P | Field mustard | nucleus | 33.74 | 20.22 |
| PGSC0003DMT400040069 | Potato | cytosol | 36.2 | 18.97 |
| CDX75589 | Canola | mitochondrion | 38.65 | 17.75 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 44.79 | 15.47 |
| CDY67096 | Canola | mitochondrion | 19.63 | 12.96 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 44.79 | 12.83 |
| Os11t0636900-02 | Rice | nucleus | 44.79 | 12.72 |
| Bra027119.1-P | Field mustard | nucleus | 37.42 | 12.42 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 42.33 | 12.21 |
| KXG28995 | Sorghum | nucleus | 44.79 | 12.17 |
| Zm00001d048777_P007 | Maize | nucleus | 44.17 | 12.04 |
| CDY12869 | Canola | nucleus | 36.2 | 11.9 |
| CDY40481 | Canola | nucleus | 37.42 | 11.82 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 41.72 | 11.81 |
| Zm00001d007632_P003 | Maize | nucleus | 44.17 | 11.45 |
| KRH56450 | Soybean | nucleus | 42.33 | 11.4 |
| AT4G36690.1 | Thale cress | nucleus | 39.88 | 11.34 |
| KRH64800 | Soybean | nucleus | 41.72 | 11.33 |
| PGSC0003DMT400033041 | Potato | nucleus | 38.65 | 11.33 |
| Solyc02g085570.2.1 | Tomato | nucleus | 38.65 | 11.29 |
| CDY35472 | Canola | nucleus | 38.04 | 11.27 |
| CDY24773 | Canola | nucleus | 38.04 | 11.19 |
| Bra010569.1-P | Field mustard | nucleus | 38.04 | 11.19 |
| Solyc02g062920.2.1 | Tomato | nucleus | 38.04 | 11.07 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 42.33 | 10.95 |
| CDY46188 | Canola | nucleus | 39.88 | 10.94 |
| Bra031477.1-P | Field mustard | nucleus | 39.88 | 10.94 |
| PGSC0003DMT400000919 | Potato | nucleus | 40.49 | 10.91 |
| AT1G60900.1 | Thale cress | nucleus | 39.26 | 10.87 |
| CDY03767 | Canola | nucleus | 39.88 | 10.71 |
| Bra040940.1-P | Field mustard | nucleus | 36.81 | 10.68 |
| CDY66742 | Canola | nucleus | 36.81 | 10.58 |
| Solyc12g008750.1.1 | Tomato | nucleus | 39.26 | 10.54 |
| CDY30313 | Canola | nucleus | 36.81 | 10.2 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 9.2 | 9.62 |
| CDY12868 | Canola | mitochondrion | 11.66 | 8.33 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 3.07 | 7.35 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 11.04 | 7.11 |
| CDY55589 | Canola | mitochondrion | 10.43 | 6.77 |
| Bra031341.1-P | Field mustard | nucleus | 10.43 | 6.77 |
| CDY40493 | Canola | nucleus | 7.98 | 4.63 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G144600.1 | EnsemblPlantsGene:TraesCS2B01G144600 | Gene3D:3.30.70.330 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PANTHER:PTHR23139 |
| PANTHER:PTHR23139:SF80 | TIGR:cd12232 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:110581544..110582542
Molecular Weight (calculated)
18315.8 Da
IEP (calculated)
5.764
GRAVY (calculated)
-0.413
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHGDLSPP ADGGSQELIP VIYQSPYSMT PQGPPCSWLF YYRPVPLGGF RRPVYEDGTT RVLCLSQMFS PDQLEDDEYY RKLCRRMTAE GQRSGGKLRR
101: TVVPRPDPSG PPVAGVGKVF LAYADIDIAA YSKTMLHWMW FEGRQVFAVF YPEDKFAAGD YDG
101: TVVPRPDPSG PPVAGVGKVF LAYADIDIAA YSKTMLHWMW FEGRQVFAVF YPEDKFAAGD YDG
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.