Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G040700.1 | Wheat | cytosol | 81.33 | 81.33 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 53.61 | 54.6 |
| AT1G60830.2 | Thale cress | nucleus | 29.52 | 44.14 |
| CDY55407 | Canola | nucleus | 28.31 | 41.96 |
| CDY40492 | Canola | nucleus | 27.71 | 30.67 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 32.53 | 28.88 |
| Bra040973.1-P | Field mustard | nucleus | 33.73 | 20.59 |
| PGSC0003DMT400040069 | Potato | cytosol | 35.54 | 18.97 |
| CDX75589 | Canola | mitochondrion | 37.95 | 17.75 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 43.37 | 15.25 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 6.02 | 14.71 |
| CDY67096 | Canola | mitochondrion | 21.08 | 14.17 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 45.18 | 13.18 |
| Os11t0636900-02 | Rice | nucleus | 45.18 | 13.07 |
| Bra027119.1-P | Field mustard | nucleus | 37.35 | 12.63 |
| Zm00001d048777_P007 | Maize | nucleus | 44.58 | 12.37 |
| KXG28995 | Sorghum | nucleus | 44.58 | 12.33 |
| PGSC0003DMT400033041 | Potato | nucleus | 40.96 | 12.23 |
| Solyc02g085570.2.1 | Tomato | nucleus | 40.96 | 12.19 |
| CDY40481 | Canola | nucleus | 37.35 | 12.02 |
| CDY12869 | Canola | nucleus | 35.54 | 11.9 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 40.36 | 11.86 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 40.96 | 11.81 |
| Zm00001d007632_P003 | Maize | nucleus | 43.98 | 11.61 |
| CDY35472 | Canola | nucleus | 37.95 | 11.45 |
| Bra010569.1-P | Field mustard | nucleus | 37.95 | 11.37 |
| CDY24773 | Canola | nucleus | 37.95 | 11.37 |
| AT4G36690.1 | Thale cress | nucleus | 39.16 | 11.34 |
| KRH56450 | Soybean | nucleus | 40.96 | 11.24 |
| KRH64800 | Soybean | nucleus | 40.36 | 11.17 |
| Solyc02g062920.2.1 | Tomato | nucleus | 37.35 | 11.07 |
| PGSC0003DMT400000919 | Potato | nucleus | 39.76 | 10.91 |
| Bra040940.1-P | Field mustard | nucleus | 36.75 | 10.85 |
| CDY66742 | Canola | nucleus | 36.75 | 10.76 |
| AT1G60900.1 | Thale cress | nucleus | 37.95 | 10.7 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 40.36 | 10.63 |
| Solyc12g008750.1.1 | Tomato | nucleus | 38.55 | 10.54 |
| CDY46188 | Canola | nucleus | 37.35 | 10.44 |
| Bra031477.1-P | Field mustard | nucleus | 37.35 | 10.44 |
| CDY30313 | Canola | nucleus | 36.75 | 10.37 |
| CDY03767 | Canola | nucleus | 37.35 | 10.21 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 7.83 | 8.33 |
| CDY12868 | Canola | mitochondrion | 10.84 | 7.89 |
| CDY55589 | Canola | mitochondrion | 9.64 | 6.37 |
| Bra031341.1-P | Field mustard | nucleus | 9.64 | 6.37 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 9.64 | 6.32 |
| CDY40493 | Canola | nucleus | 7.83 | 4.63 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G041900.1 | EnsemblPlantsGene:TraesCS5B01G041900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | SEG:seg |
| SUPFAM:SSF54928 | TIGR:cd12232 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:45943138..45944186
Molecular Weight (calculated)
18646.1 Da
IEP (calculated)
9.008
GRAVY (calculated)
-0.439
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MANHGDLSPP TDSRSQQQPI PVLYQSRYAK TPEGTPLSFV LYYTPLPPSA AATPSPVHQD GATKVLCLTR MFSPDRLADD VYYRNFCWWM AVEGRRHGGK
101: LVRTVVPRPD PSGAPVAGVG KVFLEYADLD SSTHSKTMLH LTWFRGRQVF AVFYPEDKFA HGNYDR
101: LVRTVVPRPD PSGAPVAGVG KVFLEYADLD SSTHSKTMLH LTWFRGRQVF AVFYPEDKFA HGNYDR
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.