CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46188	Canola	nucleus	92.42	94.44
AT1G60830.2	Thale cress	nucleus	16.14	88.29
CDY12868	Canola	mitochondrion	32.78	87.28
CDY40492	Canola	nucleus	21.42	86.67
CDY55407	Canola	nucleus	15.98	86.61
PGSC0003DMT400040069	Potato	cytosol	42.67	83.28
CDY67096	Canola	mitochondrion	31.96	78.54
CDY12869	Canola	nucleus	62.93	77.02
CDX75589	Canola	mitochondrion	43.49	74.37
AT1G60900.1	Thale cress	nucleus	72.16	74.36
CDY40481	Canola	nucleus	63.1	74.22
GSMUA_Achr4P16510_001	Banana	nucleus	55.85	71.82
HORVU5Hr1G090000.2	Barley	nucleus	46.29	70.78
PGSC0003DMT400033041	Potato	nucleus	60.13	65.65
Solyc02g062920.2.1	Tomato	nucleus	59.8	64.82
Solyc02g085570.2.1	Tomato	nucleus	59.47	64.7
TraesCS4D01G143400.3	Wheat	nucleus	58.48	64.66
CDY24773	Canola	nucleus	58.81	64.44
HORVU4Hr1G029030.3	Barley	nucleus	58.32	64.36
GSMUA_Achr4P11020_001	Banana	nucleus	60.96	64.24
EES08974	Sorghum	nucleus	57.66	64.22
CDY35472	Canola	nucleus	57.66	63.64
KRH64800	Soybean	nucleus	62.6	63.33
KRH56450	Soybean	nucleus	62.44	62.64
PGSC0003DMT400000919	Potato	nucleus	62.11	62.31
Solyc12g008750.1.1	Tomato	nucleus	62.11	62.11
VIT_13s0139g00410.t01	Wine grape	cytosol	6.92	61.76
CDY40493	Canola	nucleus	28.5	61.57
TraesCS4B01G145600.4	Wheat	nucleus	57.66	61.51
TraesCSU01G068100.3	Wheat	nucleus	58.48	61.21
TraesCS4A01G171800.3	Wheat	nucleus	58.48	61.1
TraesCS4D01G150000.4	Wheat	nucleus	57.5	60.91
TraesCS4A01G165000.4	Wheat	nucleus	57.66	59.83
CDY55589	Canola	mitochondrion	24.55	59.36
Os11t0636900-02	Rice	nucleus	55.52	58.71
CDY66742	Canola	nucleus	54.53	58.38
HORVU5Hr1G089980.2	Barley	nucleus, plastid	54.53	58.17
KXG28995	Sorghum	nucleus	56.18	56.83
HORVU4Hr1G038850.14	Barley	nucleus	56.51	56.69
CDY30313	Canola	nucleus	53.54	55.27
TraesCS5D01G375600.1	Wheat	nucleus	55.19	54.83
TraesCS5A01G366000.1	Wheat	nucleus	54.04	54.13
TraesCS5B01G368400.1	Wheat	nucleus	52.06	50.16
KXG29128	Sorghum	nucleus	44.15	42.34
TraesCS2A01G122400.1	Wheat	nucleus	10.87	40.49
TraesCS2B01G144600.1	Wheat	nucleus	10.71	39.88
TraesCS5A01G040700.1	Wheat	cytosol	10.21	37.35
TraesCS5B01G041900.1	Wheat	nucleus	10.21	37.35
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.39	36.54
TraesCS5D01G071700.1	Wheat	nucleus	8.73	30.81
TraesCS5B01G067400.1	Wheat	nucleus	9.06	29.41
TraesCS5D01G071600.1	Wheat	nucleus	9.06	29.41
Zm00001d007635_P004	Maize	nucleus	24.88	21.45
CDX84685	Canola	nucleus	7.58	12.37
CDX79530	Canola	nucleus	18.12	9.14
CDX84686	Canola	nucleus	8.9	6.02

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:A0A078ERU8	EnsemblPlants:CDY03767	ProteinID:CDY03767	ProteinID:CDY03767.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00117135001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0004EE8DF3
SEG:seg	:	:	:	:	:

Description

BnaC01g28840D

Coordinates

chrLK031946:+:29485..33305

Molecular Weight (calculated)

68043.8 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.842

Length

607 amino acids

Sequence
(BLAST)

001: MNYEGNGDSV TVATDDNNDN ENYIARESSP FKSLGSEDSK SRDSHVLDKD SSRSREKDKA KGRDKDRDRD REKSRDRDRE RDRHRRDRHR DRSRERNEKR
101: ERERDDLDDD DDDDHYRSRH RHRSSRDRDR EERHMRRSRS RSRSRSERRS RSEHRRRSEH RSRSRSRSRS KSKRVSGFDM APPASAMLAA TAVAAAVRTK
201: KAMYKEEPVQ RLSLVFFIFD WQLYACQVPS VPATASIPGM FPNMLAMVPG QQMGALPLLP MQAMTQQATR HARRVYVGGL PPTANEQSVA TFFSQVMSAI
301: GGNTAGLGDA VVNVYINHEK KFAFVEMRSV EEASNAMALD GIILEGVPVK VRRPTDYNPS LAAALGPSQP NPSLNLAAVG LSSGSTGGLE GPDRIFVGGL
401: PYYFTEEQIR ELLESFGPLR GFNLVKDRET GNSKGYAFCV FQDPSVTDIA CAALNGIKMG DKTLTVRRAV QGVIQPKPEQ EEVLLHAQQQ IALQRLMLQP
501: GSTPTKIVCL TQVVTADDLG DDEEYEDIME DMRQEGGKFG NLVNVVIPRP NPDHDPTPGV GKVFLEYADV DGAAKARSGM NGRKFGGNQV VAVYYPENKF
601: AQGDYEG

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.