Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G60830.2 | Thale cress | nucleus | 85.71 | 86.49 |
| CDY40492 | Canola | nucleus | 89.29 | 66.67 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 41.96 | 28.31 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 41.07 | 28.22 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 40.18 | 27.11 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 39.29 | 26.99 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 40.18 | 26.16 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 40.18 | 24.06 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 40.18 | 24.06 |
| PGSC0003DMT400040069 | Potato | cytosol | 61.61 | 22.19 |
| CDY40481 | Canola | nucleus | 96.43 | 20.93 |
| CDY12869 | Canola | nucleus | 91.07 | 20.56 |
| CDX75589 | Canola | mitochondrion | 59.82 | 18.87 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 60.71 | 17.13 |
| CDY46188 | Canola | nucleus | 87.5 | 16.5 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 67.86 | 16.1 |
| CDY03767 | Canola | nucleus | 86.61 | 15.98 |
| AT1G60900.1 | Thale cress | nucleus | 83.04 | 15.79 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 66.96 | 13.66 |
| HORVU4Hr1G029030.3 | Barley | nucleus | 66.07 | 13.45 |
| PGSC0003DMT400033041 | Potato | nucleus | 66.07 | 13.31 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 67.86 | 13.19 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 66.96 | 13.18 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 66.96 | 13.09 |
| Solyc02g085570.2.1 | Tomato | nucleus | 65.18 | 13.08 |
| EES08974 | Sorghum | nucleus | 63.39 | 13.03 |
| TraesCSU01G068100.3 | Wheat | nucleus | 66.96 | 12.93 |
| CDY35472 | Canola | nucleus | 63.39 | 12.91 |
| TraesCS4A01G171800.3 | Wheat | nucleus | 66.96 | 12.91 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 66.96 | 12.82 |
| CDY24773 | Canola | nucleus | 63.39 | 12.82 |
| CDY67096 | Canola | mitochondrion | 27.68 | 12.55 |
| Solyc02g062920.2.1 | Tomato | nucleus | 60.71 | 12.14 |
| PGSC0003DMT400000919 | Potato | nucleus | 65.18 | 12.07 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 65.18 | 12.05 |
| KRH64800 | Soybean | nucleus | 64.29 | 12.0 |
| CDY66742 | Canola | nucleus | 60.71 | 11.99 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 60.71 | 11.95 |
| KRH56450 | Soybean | nucleus | 64.29 | 11.9 |
| Os11t0636900-02 | Rice | nucleus | 60.71 | 11.85 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 64.29 | 11.78 |
| Solyc12g008750.1.1 | Tomato | nucleus | 63.39 | 11.7 |
| KXG28995 | Sorghum | nucleus | 62.5 | 11.67 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 62.5 | 11.57 |
| CDY30313 | Canola | nucleus | 60.71 | 11.56 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 62.5 | 11.11 |
| KXG29128 | Sorghum | nucleus | 55.36 | 9.79 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 4.46 | 7.35 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 9.82 | 7.05 |
| CDX84685 | Canola | nucleus | 23.21 | 6.99 |
| CDY55589 | Canola | mitochondrion | 8.04 | 3.59 |
| CDY12868 | Canola | mitochondrion | 4.46 | 2.19 |
| CDX79530 | Canola | nucleus | 23.21 | 2.16 |
| Zm00001d007635_P004 | Maize | nucleus | 12.5 | 1.99 |
| CDX84686 | Canola | nucleus | 12.5 | 1.56 |
| CDY40493 | Canola | nucleus | 1.79 | 0.71 |
Protein Annotations
| EnsemblPlants:CDY55407 | EnsemblPlantsGene:GSBRNA2T00016807001 | Gene3D:3.30.70.330 | GO:A0A078IYK6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | PFAM:PF00076 | ProteinID:CDY55407 | ProteinID:CDY55407.1 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE1D71 | UniProt:A0A078IYK6 | MapMan:35.1 | : | : | : |
Description
BnaCnng28730DBnaCnng28730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYK6]
Coordinates
chrLK033400:-:9595..10191
Molecular Weight (calculated)
12327.5 Da
IEP (calculated)
4.322
GRAVY (calculated)
-0.549
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQPGGTPTK IVCLTQVVTA NVLGDDKEYE DIMEDMRQEG GKFGNLVNVV IPRPNPEHDP TPGVEKVFLE YADLDSAAKA RSGMNGRKFD GNQVVAVYYP
101: ENKYAQGDYE AC
101: ENKYAQGDYE AC
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.