Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g085570.2.1 | Tomato | nucleus | 92.99 | 92.65 |
| PGSC0003DMT400040069 | Potato | cytosol | 50.36 | 90.03 |
| CDY12868 | Canola | mitochondrion | 33.45 | 81.58 |
| CDY67096 | Canola | mitochondrion | 36.15 | 81.38 |
| CDX75589 | Canola | mitochondrion | 49.46 | 77.46 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 62.59 | 73.73 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 74.1 | 72.92 |
| Bra040973.1-P | Field mustard | nucleus | 35.43 | 72.43 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 50.0 | 70.03 |
| AT1G60830.2 | Thale cress | nucleus | 13.67 | 68.47 |
| CDY40492 | Canola | nucleus | 18.17 | 67.33 |
| CDY35472 | Canola | nucleus | 66.37 | 67.09 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 69.42 | 67.01 |
| CDY55407 | Canola | nucleus | 13.31 | 66.07 |
| CDY24773 | Canola | nucleus | 65.47 | 65.7 |
| Bra010569.1-P | Field mustard | nucleus | 65.47 | 65.7 |
| HORVU4Hr1G029030.3 | Barley | nucleus | 64.75 | 65.45 |
| CDY12869 | Canola | nucleus | 58.27 | 65.32 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 64.39 | 65.21 |
| KRH64800 | Soybean | nucleus | 70.32 | 65.17 |
| Bra027119.1-P | Field mustard | nucleus | 57.37 | 64.97 |
| AT1G60900.1 | Thale cress | nucleus | 68.7 | 64.86 |
| AT4G36690.1 | Thale cress | nucleus | 66.37 | 64.4 |
| KRH56450 | Soybean | nucleus | 69.78 | 64.13 |
| EES08974 | Sorghum | nucleus | 62.41 | 63.67 |
| CDY40481 | Canola | nucleus | 58.45 | 62.98 |
| PGSC0003DMT400000919 | Potato | nucleus | 68.53 | 62.98 |
| Bra040940.1-P | Field mustard | nucleus | 63.49 | 62.81 |
| CDY66742 | Canola | nucleus | 63.31 | 62.08 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 63.31 | 61.86 |
| TraesCS4A01G171800.3 | Wheat | nucleus | 64.57 | 61.79 |
| Bra031477.1-P | Field mustard | nucleus | 65.65 | 61.45 |
| CDY46188 | Canola | nucleus | 65.65 | 61.45 |
| TraesCSU01G068100.3 | Wheat | nucleus | 64.03 | 61.38 |
| CDY30313 | Canola | nucleus | 64.75 | 61.22 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 62.95 | 61.08 |
| CDY03767 | Canola | nucleus | 65.65 | 60.13 |
| Os11t0636900-02 | Rice | nucleus | 62.05 | 60.1 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 62.59 | 59.49 |
| CDY40493 | Canola | nucleus | 29.32 | 58.01 |
| KXG28995 | Sorghum | nucleus | 62.23 | 57.67 |
| PGSC0003DMT400057795 | Potato | mitochondrion | 28.78 | 56.74 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 61.33 | 56.36 |
| CDY55589 | Canola | mitochondrion | 24.82 | 54.98 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 56.12 | 54.83 |
| Bra031341.1-P | Field mustard | nucleus | 24.28 | 53.78 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 24.46 | 53.75 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 57.73 | 52.54 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 56.83 | 52.15 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 54.86 | 48.41 |
| KXG29128 | Sorghum | nucleus | 46.76 | 41.07 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 12.23 | 40.96 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 11.87 | 40.49 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 11.87 | 39.76 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 11.33 | 38.65 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 10.07 | 32.56 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 9.89 | 29.41 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 9.71 | 28.88 |
| Zm00001d007635_P004 | Maize | nucleus | 26.98 | 21.31 |
Protein Annotations
| EntrezGene:102585125 | MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | InterPro:IPR000504 |
| InterPro:IPR012677 | UniProt:M1AYI6 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400012685 | PGSC:PGSC0003DMG400012685 |
| EnsemblPlants:PGSC0003DMT400033041 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 | InterPro:U2AF_lg | UniParc:UPI000294DB3B | RefSeq:XP_006363145.1 |
| SEG:seg | : | : | : | : | : |
Description
U2 snRNP auxiliary factor large subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400012685]
Coordinates
chr2:+:40790045..40796217
Molecular Weight (calculated)
62072.2 Da
IEP (calculated)
7.287
GRAVY (calculated)
-0.932
Length
556 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEYEGNGED IENNGSSPYS DSKSQRTSRD PEKERGSSRS REKEREKGRD KDRDRDRNVD RDRDRVKERD KDMDRDRERE KGRDRHHRDR HRDRSDRRER
101: TRDRDEDDLQ RTRDYDRRRD NDKDREDRQR HKPSSRGRSE HRSRSRSRSP SKSKRISGFD MAPPTSALLS GATDVAGQVP GTTNPSIPGM FSNMFPLAAG
201: QFGALPIMPV QAMTQQATRH ARRVYVGGLP PTANEQSVAT FFSHVMYAIG GNTAGPGDAV VNVYINHEKK FAFVEMRSVE EASNAMALDG VIFEGGPVKV
301: RRPSDYNPSL AATLGPSQPS PNLNLAAVGL TPGSSGGLEG PDRIFVGGLP YYFTESQIRE LLESFGQLRG FDLVKDRETG NSKGYAFCVY QDVSVTDIAC
401: AALNGIKMGD KTLTVRRANQ GTTQPNPEQE SVLLHAQQQI ALQRFMLQPG ALATKVLCLT EVVSVDELKD DDDYQDILED MRIECGKFGA LLNVVIPRPN
501: PNGEPTPGLG KVFLEYADVD SSSKARQGLN GRKFGGNQVV AVFYPENKFS EGDYEA
101: TRDRDEDDLQ RTRDYDRRRD NDKDREDRQR HKPSSRGRSE HRSRSRSRSP SKSKRISGFD MAPPTSALLS GATDVAGQVP GTTNPSIPGM FSNMFPLAAG
201: QFGALPIMPV QAMTQQATRH ARRVYVGGLP PTANEQSVAT FFSHVMYAIG GNTAGPGDAV VNVYINHEKK FAFVEMRSVE EASNAMALDG VIFEGGPVKV
301: RRPSDYNPSL AATLGPSQPS PNLNLAAVGL TPGSSGGLEG PDRIFVGGLP YYFTESQIRE LLESFGQLRG FDLVKDRETG NSKGYAFCVY QDVSVTDIAC
401: AALNGIKMGD KTLTVRRANQ GTTQPNPEQE SVLLHAQQQI ALQRFMLQPG ALATKVLCLT EVVSVDELKD DDDYQDILED MRIECGKFGA LLNVVIPRPN
501: PNGEPTPGLG KVFLEYADVD SSSKARQGLN GRKFGGNQVV AVFYPENKFS EGDYEA
001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
Arabidopsis Description
U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.