Factsheet for Bra031477.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46188	Canola	nucleus	100.0	100.0
AT1G60830.2	Thale cress	nucleus	16.67	89.19
Bra040973.1-P	Field mustard	nucleus	40.07	87.5
PGSC0003DMT400040069	Potato	cytosol	43.77	83.6
Bra027119.1-P	Field mustard	nucleus	62.79	75.97
AT1G60900.1	Thale cress	nucleus	73.91	74.53
GSMUA_Achr4P16510_001	Banana	nucleus	56.73	71.4
HORVU5Hr1G090000.2	Barley	nucleus	47.31	70.78
PGSC0003DMT400033041	Potato	nucleus	61.45	65.65
TraesCS4D01G143400.3	Wheat	nucleus	59.76	64.66
Solyc02g062920.2.1	Tomato	nucleus	60.94	64.64
Solyc02g085570.2.1	Tomato	nucleus	60.61	64.52
GSMUA_Achr4P11020_001	Banana	nucleus	62.29	64.24
HORVU4Hr1G029030.3	Barley	nucleus	59.43	64.18
EES08974	Sorghum	nucleus	58.75	64.04
Bra010569.1-P	Field mustard	nucleus	59.43	63.72
KRH64800	Soybean	nucleus	64.14	63.5
VIT_13s0139g00410.t01	Wine grape	cytosol	7.24	63.24
KRH56450	Soybean	nucleus	63.97	62.81
TraesCS4B01G145600.4	Wheat	nucleus	59.6	62.21
PGSC0003DMT400000919	Potato	nucleus	62.96	61.82
Solyc12g008750.1.1	Tomato	nucleus	62.96	61.61
TraesCS4D01G150000.4	Wheat	nucleus	59.09	61.26
TraesCSU01G068100.3	Wheat	nucleus	59.43	60.86
TraesCS4A01G171800.3	Wheat	nucleus	59.43	60.76
TraesCS4A01G165000.4	Wheat	nucleus	59.6	60.51
Bra040940.1-P	Field mustard	nucleus	56.06	59.25
Os11t0636900-02	Rice	nucleus	56.4	58.36
Bra031341.1-P	Field mustard	nucleus	24.58	58.17
Bra010656.1-P	Field mustard	mitochondrion, plastid	24.58	57.71
HORVU5Hr1G089980.2	Barley	nucleus, plastid	55.05	57.47
HORVU4Hr1G038850.14	Barley	nucleus	58.08	57.02
KXG28995	Sorghum	nucleus	56.9	56.33
TraesCS5D01G375600.1	Wheat	nucleus	55.72	54.17
TraesCS5A01G366000.1	Wheat	nucleus	54.71	53.63
TraesCS5B01G368400.1	Wheat	nucleus	52.02	49.05
KXG29128	Sorghum	nucleus	45.45	42.65
TraesCS2A01G122400.1	Wheat	nucleus	11.11	40.49
TraesCS2B01G144600.1	Wheat	nucleus	10.94	39.88
TraesCS5B01G041900.1	Wheat	nucleus	10.44	37.35
TraesCS5A01G040700.1	Wheat	cytosol	10.44	37.35
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.76	37.18
TraesCS5D01G071700.1	Wheat	nucleus	9.09	31.4
TraesCS5B01G067400.1	Wheat	nucleus	9.26	29.41
TraesCS5D01G071600.1	Wheat	nucleus	9.26	29.41
Zm00001d007635_P004	Maize	nucleus	24.07	20.31
Bra022941.1-P	Field mustard	nucleus	18.35	8.64

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra031477	EnsemblPlants:Bra031477.1	EnsemblPlants:Bra031477.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4ERQ1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0002544E4D	SEG:seg	:

Description

AT1G60900 (E=1e-192) | U2 snRNP auxiliary factor large subunit, putative

Coordinates

chrA01:+:17107374..17110843

Molecular Weight (calculated)

66494.0 Da

IEP (calculated)

9.105

GRAVY (calculated)

-0.846

Length

594 amino acids

Sequence
(BLAST)

001: MNYEGNGDSV TLATDDNNDK ENYIARKSSP FKSRDSHDLD KDSSRSRDKD KDKEKGPDKD RDRDRERDRH RRDRHRDRSR ERSEKRERER DDLDDDDDDD
101: DHYRSRHRHR SSRDRDREER HRRRSRSRSR SRSERRSRSE HRRRSQHRSR SRSRSRSKSK RVSGFDMAPP ASAMLAATAV AAAVRTKKAM YKEESVQRLS
201: LVFFIFDWQL YACQVPSVPA TAGIPGMFPN MLAMVPGQQM GALPLLPMQA MTQQATRHAR RVYVGGLPPT ANEQSVATFF SQVMSAIGGN TAGPGDAVVN
301: VYINHEKKFA FVEMRSVEEA SNAMALDGII LEGVPVKVRR PTDYNPSLAA ALGPSQPNPS LNLAAVGLSS GSTGGLEGPD RIFVGGLPYY FTEEQIRELL
401: ESFGPLRGFN LVKDRETGNS KGYAFCVFQD PSVTDIACAA LNGIKMGDKT LTVRRAVQGV IQPKPEQEEV LLHAQQQIAL QRLMLQPGGT PTKIVCLTQV
501: VTADDLGDDE EYEDIMEDMR QEGGKFGNLV NVVIPRPNPD HDPTPGVGKV FLEYADVDGA AKARSGMNGR KFGGNQVVAV YYPENKFAQG DYEG

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.