Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79530 | Canola | nucleus | 70.42 | 73.75 |
| AT2G33435.1 | Thale cress | nucleus | 44.96 | 42.79 |
| KRH69095 | Soybean | nucleus | 7.77 | 32.89 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 23.31 | 29.97 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 10.55 | 29.3 |
| KRH31685 | Soybean | nucleus | 22.6 | 28.93 |
| GSMUA_Achr11P... | Banana | nucleus | 10.86 | 28.84 |
| Zm00001d048364_P002 | Maize | nucleus | 20.46 | 26.43 |
| OQU93274 | Sorghum | nucleus | 20.14 | 26.21 |
| Solyc09g090420.2.1 | Tomato | nucleus | 22.36 | 25.52 |
| Os01t0956600-01 | Rice | nucleus | 10.94 | 22.7 |
| Os03t0138100-01 | Rice | nucleus | 11.42 | 22.39 |
| Bra040940.1-P | Field mustard | nucleus | 8.41 | 18.86 |
| Bra031477.1-P | Field mustard | nucleus | 8.64 | 18.35 |
| Bra027119.1-P | Field mustard | nucleus | 7.14 | 18.33 |
| Bra010569.1-P | Field mustard | nucleus | 7.77 | 17.69 |
| Bra040973.1-P | Field mustard | nucleus | 3.73 | 17.28 |
| Bra031341.1-P | Field mustard | nucleus | 2.7 | 13.55 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 2.46 | 12.25 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EnsemblPlantsGene:Bra022941 | EnsemblPlants:Bra022941.1 | EnsemblPlants:Bra022941.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M4E2E1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000253FD31 | SEG:seg |
Description
AT2G33435 (E=2e-113) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA03:+:7873099..7880012
Molecular Weight (calculated)
141240.0 Da
IEP (calculated)
6.650
GRAVY (calculated)
-1.190
Length
1261 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNEVSDQKEK PDGHEGSAAR TRPTSVEEIM VRRKRKESLE NLEAAQLLGN DLVGKVSDYH ESRKGDYDES KEVSREEGVE NSLRKKEDAI SDSREERQDK
0101: SREEDSFGAV QLVGNNLVEK VSDYHESEKW NDRSEKPRHG ELVNDSSRNK EEAISSSKDE KLDKEGTVGA ATLLGNDLGE KVSDDHASEK GNDKSKKVRH
0201: EERGKDSSRK KEDATSSSKN EGPDKPRKDD HVETAQLLGN DLVEKVSDCR ASDKELEKSK KVSCESVKDS SRKKEEATSR SREGRLDKPM KKDPVDKVSD
0301: YRASGREHDR SKKLRPGERV KDSSKKKEDT ISSAREEKSM KDDPVGAAQL LSNDLVEKVS DYHESKKGYH RSEKLRREED DKDRLRKKVD AISSCREEKL
0401: DKPTKEEEPA GHRKRKAEGE GSRAKEKIVE EHSKDRRIKK EETNSSFREE RPDKKMKKED LAANRKIRVE GEFPTTETKT RTDRDGRGVD TRMKANRERP
0501: SEKTTEKQIH PQDAGREQGR NALENSAGSR KRLRSLVVAD IPRNENSTKP DSGNKRKNQN GDHMTNRERD VSRRHDPTKV HAVEVSERSE KREQPKSDRR
0601: DMRERRRSRS RDHGGQERQK RSSPLPKAEK ATSRHKRGHE DRSENTVKDR AGKHHFNDND NKSRRYSSSK SELGGYSPRK RREDASAKAA SPSNLPSEKK
0701: VAKWDLPPTV TAGMFSNSGF SGLQPATQTA YPTMSEVSLT LLKPQIEASF RTPPARQTTS IDSVQLTEST RRMRRLYAEN VPDSASEKSL IECFNGYMLS
0801: SGSNHIKGSE PCISCIINKE KSQALVEFLT PQDASAALSL DGCSFAGSNL KIRRPKDYVE TTSGELEKKE PATNALSDNM EDSSNKIFIG GFPKTISSEM
0901: LKEIVGVFGP LKAYRFVINN DLNQRCAFLE YIDGSVTPKA CAGLNGMKLG GSVITAVCAL PDSSSVASDE NPPFYGIPEH AKPLLRKPKH ILKLKNLVDP
1001: EDLPSLSVPE MKEILEDVRL ECARFGVIKS INIVKHESKD ISGSNTDASL NPESKEMNVS VIQEKDEISE KVDDTADNVD SGEVVRSDSS MGADKLREPC
1101: SVTALETISQ ANEDHDSTEQ GNSEKLVGES EAAIPQEEVG SARAQDDAEI PQEEVGSGRA QDEPEIPQEE IGSARAQDEP ENPQEVGPAR AVKTRWDSGD
1201: KIEEEQDPEE VFEPGCIFIE YGRPEATRVA AHSLHGRLYD NKIVKAEYVS KELYKIRFPS G
0101: SREEDSFGAV QLVGNNLVEK VSDYHESEKW NDRSEKPRHG ELVNDSSRNK EEAISSSKDE KLDKEGTVGA ATLLGNDLGE KVSDDHASEK GNDKSKKVRH
0201: EERGKDSSRK KEDATSSSKN EGPDKPRKDD HVETAQLLGN DLVEKVSDCR ASDKELEKSK KVSCESVKDS SRKKEEATSR SREGRLDKPM KKDPVDKVSD
0301: YRASGREHDR SKKLRPGERV KDSSKKKEDT ISSAREEKSM KDDPVGAAQL LSNDLVEKVS DYHESKKGYH RSEKLRREED DKDRLRKKVD AISSCREEKL
0401: DKPTKEEEPA GHRKRKAEGE GSRAKEKIVE EHSKDRRIKK EETNSSFREE RPDKKMKKED LAANRKIRVE GEFPTTETKT RTDRDGRGVD TRMKANRERP
0501: SEKTTEKQIH PQDAGREQGR NALENSAGSR KRLRSLVVAD IPRNENSTKP DSGNKRKNQN GDHMTNRERD VSRRHDPTKV HAVEVSERSE KREQPKSDRR
0601: DMRERRRSRS RDHGGQERQK RSSPLPKAEK ATSRHKRGHE DRSENTVKDR AGKHHFNDND NKSRRYSSSK SELGGYSPRK RREDASAKAA SPSNLPSEKK
0701: VAKWDLPPTV TAGMFSNSGF SGLQPATQTA YPTMSEVSLT LLKPQIEASF RTPPARQTTS IDSVQLTEST RRMRRLYAEN VPDSASEKSL IECFNGYMLS
0801: SGSNHIKGSE PCISCIINKE KSQALVEFLT PQDASAALSL DGCSFAGSNL KIRRPKDYVE TTSGELEKKE PATNALSDNM EDSSNKIFIG GFPKTISSEM
0901: LKEIVGVFGP LKAYRFVINN DLNQRCAFLE YIDGSVTPKA CAGLNGMKLG GSVITAVCAL PDSSSVASDE NPPFYGIPEH AKPLLRKPKH ILKLKNLVDP
1001: EDLPSLSVPE MKEILEDVRL ECARFGVIKS INIVKHESKD ISGSNTDASL NPESKEMNVS VIQEKDEISE KVDDTADNVD SGEVVRSDSS MGADKLREPC
1101: SVTALETISQ ANEDHDSTEQ GNSEKLVGES EAAIPQEEVG SARAQDDAEI PQEEVGSGRA QDEPEIPQEE IGSARAQDEP ENPQEVGPAR AVKTRWDSGD
1201: KIEEEQDPEE VFEPGCIFIE YGRPEATRVA AHSLHGRLYD NKIVKAEYVS KELYKIRFPS G
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.