Factsheet for Bra040973.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40492	Canola	nucleus	52.94	96.0
AT1G60830.2	Thale cress	nucleus	33.82	82.88
PGSC0003DMT400040069	Potato	cytosol	73.16	63.99
Bra031341.1-P	Field mustard	nucleus	50.0	54.18
Bra010656.1-P	Field mustard	mitochondrion, plastid	48.53	52.17
Bra027119.1-P	Field mustard	nucleus	90.81	50.31
HORVU5Hr1G090000.2	Barley	nucleus	64.34	44.08
GSMUA_Achr4P16510_001	Banana	nucleus	76.47	44.07
Bra031477.1-P	Field mustard	nucleus	87.5	40.07
AT1G60900.1	Thale cress	nucleus	84.19	38.88
EES08974	Sorghum	nucleus	72.06	35.96
TraesCS4D01G143400.3	Wheat	nucleus	72.43	35.88
GSMUA_Achr4P11020_001	Banana	nucleus	75.74	35.76
HORVU4Hr1G029030.3	Barley	nucleus	72.06	35.64
Solyc02g062920.2.1	Tomato	nucleus	73.16	35.54
PGSC0003DMT400033041	Potato	nucleus	72.43	35.43
TraesCS4B01G145600.4	Wheat	nucleus	73.53	35.15
Solyc02g085570.2.1	Tomato	nucleus	72.06	35.13
TraesCS4D01G150000.4	Wheat	nucleus	73.53	34.9
Bra010569.1-P	Field mustard	nucleus	70.22	34.48
TraesCS2A01G122400.1	Wheat	nucleus	20.59	34.36
PGSC0003DMT400000919	Potato	nucleus	76.1	34.21
TraesCS4A01G165000.4	Wheat	nucleus	73.53	34.19
TraesCSU01G068100.3	Wheat	nucleus	72.43	33.97
TraesCS4A01G171800.3	Wheat	nucleus	72.43	33.91
TraesCS2B01G144600.1	Wheat	nucleus	20.22	33.74
TraesCS5A01G040700.1	Wheat	cytosol	20.59	33.73
TraesCS5B01G041900.1	Wheat	nucleus	20.59	33.73
KRH56450	Soybean	nucleus	75.0	33.72
KRH64800	Soybean	nucleus	73.9	33.5
Os11t0636900-02	Rice	nucleus	70.59	33.45
Solyc12g008750.1.1	Tomato	nucleus	73.9	33.11
CDY40493	Canola	nucleus	33.82	32.74
Bra040940.1-P	Field mustard	nucleus	66.54	32.21
HORVU4Hr1G038850.14	Barley	nucleus	71.32	32.07
KXG28995	Sorghum	nucleus	70.22	31.83
HORVU5Hr1G089980.2	Barley	nucleus, plastid	63.97	30.58
TraesCS5A01G366000.1	Wheat	nucleus	66.18	29.7
TraesCS5D01G375600.1	Wheat	nucleus	65.07	28.97
KXG29128	Sorghum	nucleus	66.18	28.44
TraesCS5B01G368400.1	Wheat	nucleus	64.71	27.94
TraesCS5D01G071700.1	Wheat	nucleus	16.91	26.74
TraesCS5D01G071600.1	Wheat	nucleus	18.01	26.2
TraesCS5B01G067400.1	Wheat	nucleus	16.54	24.06
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.93	17.31
VIT_13s0139g00410.t01	Wine grape	cytosol	3.31	13.24
Zm00001d007635_P004	Maize	nucleus	14.34	5.54
Bra022941.1-P	Field mustard	nucleus	17.28	3.73

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra040973	EnsemblPlants:Bra040973.1	EnsemblPlants:Bra040973.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4FIP4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI000253EB48	:	:

Description

AT1G60900 (E=7e-137) | U2 snRNP auxiliary factor large subunit, putative

Coordinates

chrScaffold000347:-:11438..12648

Molecular Weight (calculated)

29294.1 Da

IEP (calculated)

5.798

GRAVY (calculated)

-0.344

Length

272 amino acids

Sequence
(BLAST)

001: MALDGIILEG VPVKVKRPTD YNPSLAAALG PSQPNPNLNL AAVGFSSGST GGLEGPDRLF LGGIPYRLTE DQIRELLESF GPLRGFNLVK DRETGNSMGY
101: AFCVFQDPSV TDMACAALNG IKMGDKTLTV RRAVQGGVQP KPEQKDRLLH TKQQIALQGL MLQPGGTPTK IVCLTHVVTA NVLGDDKEYE EIMEDMRQEG
201: GKLGNLVNVV IPRPKPDHDP TPGVGKVFLE YADLDGAAKA RSGMNGRKFG GNQVVAVYYP ENKYAQGDYD GY

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.