Factsheet for Os11t0636900-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0497200-01
Os07t0101400-01
Os07t0640401-00
Os08t0544800-01
Os09t0521300-00
Os10t0115600-02
Os11t0199600-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	Os05t0497200-01	AT1G28360.1	21798944
AT4G36690.1	Os07t0101400-01	AT2G39760.1	21798944
AT4G36690.1	Os10t0115600-02	AT3G50670.1	21798944
AT4G36690.1	Os07t0640401-00	AT5G49400.1	21798944
AT4G36690.1	Os11t0199600-02	AT5G49400.1	21798944
AT4G36690.1	Os08t0544800-01	AT5G51910.1	21798944
AT4G36690.1	Os09t0521300-00	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12868	Canola	mitochondrion	31.36	78.95
PGSC0003DMT400040069	Potato	cytosol	42.68	78.78
CDY67096	Canola	mitochondrion	33.1	76.92
KXG28995	Sorghum	nucleus	75.44	72.17
CDX75589	Canola	mitochondrion	44.6	72.11
GSMUA_Achr4P16510_001	Banana	nucleus	58.71	71.4
Bra040973.1-P	Field mustard	nucleus	33.45	70.59
Zm00001d048777_P007	Maize	nucleus	72.82	69.9
Zm00001d007632_P003	Maize	nucleus	73.87	67.41
VIT_04s0023g01450.t01	Wine grape	nucleus	63.41	64.42
AT1G60830.2	Thale cress	nucleus	12.37	63.96
GSMUA_Achr4P11020_001	Banana	nucleus	63.59	63.37
PGSC0003DMT400033041	Potato	nucleus	60.1	62.05
Solyc02g062920.2.1	Tomato	nucleus	60.28	61.79
CDY35472	Canola	nucleus	58.88	61.45
CDY40492	Canola	nucleus	16.03	61.33
Solyc02g085570.2.1	Tomato	nucleus	59.58	61.29
Bra027119.1-P	Field mustard	nucleus	52.09	60.9
CDY40481	Canola	nucleus	54.7	60.85
CDY24773	Canola	nucleus	58.71	60.83
Bra010569.1-P	Field mustard	nucleus	58.71	60.83
CDY55407	Canola	nucleus	11.85	60.71
CDY12869	Canola	nucleus	52.44	60.69
AT1G60900.1	Thale cress	nucleus	61.67	60.1
KRH64800	Soybean	nucleus	62.02	59.33
VIT_13s0139g00410.t01	Wine grape	cytosol	6.97	58.82
AT4G36690.1	Thale cress	nucleus	58.71	58.81
KRH56450	Soybean	nucleus	61.5	58.35
Bra040940.1-P	Field mustard	nucleus	56.62	57.83
CDY66742	Canola	nucleus	55.92	56.61
Bra031477.1-P	Field mustard	nucleus	58.36	56.4
CDY46188	Canola	nucleus	58.36	56.4
CDY30313	Canola	nucleus	57.14	55.78
Solyc12g008750.1.1	Tomato	nucleus	58.88	55.68
CDY03767	Canola	nucleus	58.71	55.52
CDY40493	Canola	nucleus	27.0	55.16
PGSC0003DMT400000919	Potato	nucleus	58.01	55.04
CDY55589	Canola	mitochondrion	23.34	53.39
Bra010656.1-P	Field mustard	mitochondrion, plastid	23.34	52.96
Bra031341.1-P	Field mustard	nucleus	22.82	52.19
TraesCS2A01G122400.1	Wheat	nucleus	13.07	46.01
TraesCS5B01G041900.1	Wheat	nucleus	13.07	45.18
TraesCS2B01G144600.1	Wheat	nucleus	12.72	44.79
TraesCS5A01G040700.1	Wheat	cytosol	12.72	43.98
TraesCS5D01G071700.1	Wheat	nucleus	10.63	35.47
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.06	33.33
TraesCS5B01G067400.1	Wheat	nucleus	10.63	32.62
TraesCS5D01G071600.1	Wheat	nucleus	10.63	32.62
Os01t0956600-01	Rice	nucleus	13.41	12.66
Os03t0138100-01	Rice	nucleus	12.54	11.2

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EntrezGene:4350981	ProteinID:ABA94914.2	EMBL:AK073768	EMBL:AY224501
ProteinID:BAF28693.1	ProteinID:BAT14972.1	ProteinID:EEE52422.1	GO:GO:0000243	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008187
GO:GO:0008380	GO:GO:0009987	GO:GO:0016607	GO:GO:0030628	GO:GO:0071004	GO:GO:0089701
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os11g0636900	EnsemblPlants:Os11t0636900-02	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	UniProt:Q2R0Q1	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg
UniParc:UPI0000D89B73	RefSeq:XP_015617576.1	SEG:seg	:	:	:

Description

U2AF65ASimilar to Splicing factor U2af large subunit A. (Os11t0636900-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0636900-02)

Coordinates

chr11:-:25148722..25153451

Molecular Weight (calculated)

63405.8 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.911

Length

574 amino acids

Sequence
(BLAST)

001: MAEHEEQPYE GNGNGGDPAP ASAYAEYPAP EGSPPAAAAK PTGFSDGATD GGRSQHETQP HDGRSSKSRE RERERDKDKE RDRDRDRDRR DRDRGDKDRD
101: RDRHREHRDR SERREHHDRE RSDDRDRRRG HDSERRRDRD RDGHRRHRSR SRSPSKGRDR RSRSRSRSRS SKRVSGFDQG PQAAIPALAA GAAPGQVPVV
201: APAISGMLPN MFNLTQTPFT PLVIQPQAMT QQATRHARRV YVGGLPPTAN EHTVAVYFNQ VMAAVGGNTA GPGDAVLNVY INHDKKFAFV EMRSVEEASN
301: AMALDGIMFE GAPVKVRRPT DYNPSLAAAL GPSQPNPNLN LAAVGLTPGS AGGLEGPDRI FVGGLPYYFT EAQVRELLES FGPLRGFDLV KDRETGNSKG
401: YAFCVYQDLN VTDIACAALN GIKMGDKTLT VRRANQGASQ PRPEQESMLL HVQQQAQMQK LMFQVGGGAL PTKVVCLTQV VSPDELRDDE EYEDIVQDMR
501: EEGCRYGNLV KVVIPRPDPS GAPVAGVGRV FLEFADVESS TKAKNGMHGR KFANNQVVAV FYPEDKFAEG QYDG

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.