CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67096	Canola	mitochondrion	67.98	62.75
CDY40493	Canola	nucleus	71.49	58.01
VIT_13s0139g00410.t01	Wine grape	cytosol	16.23	54.41
CDY55589	Canola	mitochondrion	56.14	51.0
PGSC0003DMT400040069	Potato	cytosol	68.42	50.16
CDX75589	Canola	mitochondrion	71.93	46.2
HORVU5Hr1G090000.2	Barley	nucleus	73.68	42.32
CDY12869	Canola	nucleus	91.67	42.14
CDY40481	Canola	nucleus	91.23	40.31
GSMUA_Achr4P16510_001	Banana	nucleus	81.14	39.19
CDY46188	Canola	nucleus	87.72	33.67
PGSC0003DMT400033041	Potato	nucleus	81.58	33.45
Solyc02g085570.2.1	Tomato	nucleus	81.58	33.33
AT1G60900.1	Thale cress	nucleus	85.96	33.28
Solyc02g062920.2.1	Tomato	nucleus	81.14	33.04
EES08974	Sorghum	nucleus	78.51	32.84
CDY03767	Canola	nucleus	87.28	32.78
CDY35472	Canola	nucleus	78.51	32.55
TraesCS4D01G143400.3	Wheat	nucleus	78.07	32.42
HORVU4Hr1G029030.3	Barley	nucleus	78.07	32.36
CDY24773	Canola	nucleus	78.51	32.31
GSMUA_Achr4P11020_001	Banana	nucleus	81.58	32.29
TraesCS4B01G145600.4	Wheat	nucleus	78.51	31.46
Os11t0636900-02	Rice	nucleus	78.95	31.36
TraesCS4D01G150000.4	Wheat	nucleus	78.51	31.24
TraesCSU01G068100.3	Wheat	nucleus	78.07	30.69
KRH64800	Soybean	nucleus	80.7	30.67
Solyc12g008750.1.1	Tomato	nucleus	81.58	30.64
TraesCS4A01G171800.3	Wheat	nucleus	78.07	30.64
TraesCS4A01G165000.4	Wheat	nucleus	78.51	30.6
CDY66742	Canola	nucleus	75.0	30.16
PGSC0003DMT400000919	Potato	nucleus	79.82	30.08
KRH56450	Soybean	nucleus	79.39	29.92
KXG28995	Sorghum	nucleus	78.07	29.67
HORVU4Hr1G038850.14	Barley	nucleus	78.51	29.59
VIT_13s0139g00390.t01	Wine grape	plasma membrane	20.18	29.49
HORVU5Hr1G089980.2	Barley	nucleus, plastid	73.25	29.35
CDY30313	Canola	nucleus	74.56	28.91
TraesCS5A01G366000.1	Wheat	nucleus	74.12	27.89
TraesCS5D01G375600.1	Wheat	nucleus	73.25	27.33
TraesCS5B01G368400.1	Wheat	nucleus	74.12	26.83
KXG29128	Sorghum	nucleus	73.25	26.38
TraesCS2A01G122400.1	Wheat	nucleus	8.33	11.66
TraesCS2B01G144600.1	Wheat	nucleus	8.33	11.66
TraesCS5B01G041900.1	Wheat	nucleus	7.89	10.84
CDY40492	Canola	nucleus	7.02	10.67
TraesCS5A01G040700.1	Wheat	cytosol	7.46	10.24
Zm00001d007635_P004	Maize	nucleus	27.63	8.95
CDX84685	Canola	nucleus	9.65	5.91
TraesCS5D01G071700.1	Wheat	nucleus	3.95	5.23
AT1G60830.2	Thale cress	nucleus	2.19	4.5
CDY55407	Canola	nucleus	2.19	4.46
CDX79530	Canola	nucleus	21.05	3.99
TraesCS5B01G067400.1	Wheat	nucleus	3.07	3.74
TraesCS5D01G071600.1	Wheat	nucleus	3.07	3.74
CDX84686	Canola	nucleus	10.09	2.56

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:A0A078FL12	UniProt:A0A078FL12	EnsemblPlants:CDY12868	ProteinID:CDY12868
ProteinID:CDY12868.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00070524001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0004EEE4EC

Description

BnaA09g14060DBnaA09g14060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL12]

Coordinates

chrLK032028:+:33731..36123

Molecular Weight (calculated)

24392.2 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.068

Length

228 amino acids

Sequence
(BLAST)

001: MFHNVLAMVP NQATRHARRV YVGGLPPTAN EQSVATFFSQ VMSAVGGNTA GPGDAVVNVY INHEKKFAFV EMRSVEEASN AMALDGIILE GVPVKVKRPT
101: DYNPSLAAAL GPSQPNPNLN LAAVGFSSGS TGGLEGPDRL FVGGVPYYLT EDQIRELLES FGPLRGFNLV KDRETGNSMG YAFCVFQDPS VTDIACAALN
201: GIKMGNKTLT VRRAVQGVRK QVFTYSTT

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.