CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91429
KRG97837
KRH02335
KRH10926
KRH21385
KRH28659
KRH31032
KRH35393
KRH50753
KRH69931
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	KRH10926	AT1G28360.1	21798944
AT4G36690.1	KRH21385	AT1G28360.1	21798944
AT4G36690.1	KRG97837	AT2G39760.1	21798944
AT4G36690.1	KRH31032	AT2G39760.1	21798944
AT4G36690.1	KRH28659	AT3G50670.1	21798944
AT4G36690.1	KRH69931	AT3G50670.1	21798944
AT4G36690.1	KRH76798	AT3G50670.1	21798944
AT4G36690.1	KRH02335	AT5G49400.1	21798944
AT4G36690.1	KRH50753	AT5G49400.1	21798944
AT4G36690.1	KRG91429	AT5G51910.1	21798944
AT4G36690.1	KRH35393	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64800	Soybean	nucleus	90.25	91.0
PGSC0003DMT400040069	Potato	cytosol	42.48	82.64
CDY67096	Canola	mitochondrion	32.73	80.16
CDY12868	Canola	mitochondrion	29.92	79.39
Bra040973.1-P	Field mustard	nucleus	33.72	75.0
CDX75589	Canola	mitochondrion	43.97	74.93
GSMUA_Achr4P16510_001	Banana	nucleus	57.85	74.15
VIT_04s0023g01450.t01	Wine grape	nucleus	68.93	73.81
HORVU5Hr1G090000.2	Barley	nucleus	45.95	70.03
PGSC0003DMT400033041	Potato	nucleus	64.13	69.78
CDY40492	Canola	nucleus	17.19	69.33
Solyc02g085570.2.1	Tomato	nucleus	63.8	69.18
Solyc02g062920.2.1	Tomato	nucleus	63.97	69.11
GSMUA_Achr4P11020_001	Banana	nucleus	63.97	67.19
AT1G60900.1	Thale cress	nucleus	64.3	66.04
CDY12869	Canola	nucleus	54.05	65.93
Bra027119.1-P	Field mustard	nucleus	53.22	65.58
AT1G60830.2	Thale cress	nucleus	11.9	64.86
CDY40481	Canola	nucleus	55.21	64.73
EES08974	Sorghum	nucleus	58.02	64.4
CDY35472	Canola	nucleus	58.51	64.36
CDY55407	Canola	nucleus	11.9	64.29
AT4G36690.1	Thale cress	nucleus	60.83	64.22
TraesCS4D01G143400.3	Wheat	nucleus	58.18	64.12
CDY46188	Canola	nucleus	62.81	63.97
Bra031477.1-P	Field mustard	nucleus	62.81	63.97
CDY24773	Canola	nucleus	58.51	63.9
Bra010569.1-P	Field mustard	nucleus	58.51	63.9
TraesCS4D01G150000.4	Wheat	nucleus	60.17	63.53
HORVU4Hr1G029030.3	Barley	nucleus	57.52	63.27
TraesCS4B01G145600.4	Wheat	nucleus	59.5	63.27
TraesCS4A01G165000.4	Wheat	nucleus	60.5	62.56
PGSC0003DMT400000919	Potato	nucleus	62.48	62.48
CDY03767	Canola	nucleus	62.64	62.44
Bra040940.1-P	Field mustard	nucleus	57.36	61.74
Os11t0636900-02	Rice	nucleus	58.35	61.5
Solyc12g008750.1.1	Tomato	nucleus	61.65	61.45
TraesCS4A01G171800.3	Wheat	nucleus	58.18	60.59
TraesCSU01G068100.3	Wheat	nucleus	58.02	60.52
CDY66742	Canola	nucleus	56.69	60.49
KXG28995	Sorghum	nucleus	59.83	60.33
CDY30313	Canola	nucleus	56.53	58.16
HORVU4Hr1G038850.14	Barley	nucleus	57.52	57.52
HORVU5Hr1G089980.2	Barley	nucleus, plastid	53.88	57.29
CDY40493	Canola	nucleus	26.45	56.94
TraesCS5D01G375600.1	Wheat	nucleus	55.87	55.32
TraesCS5A01G366000.1	Wheat	nucleus	55.21	55.12
CDY55589	Canola	mitochondrion	22.64	54.58
Bra031341.1-P	Field mustard	nucleus	22.64	54.58
Bra010656.1-P	Field mustard	mitochondrion, plastid	21.98	52.57
TraesCS5B01G368400.1	Wheat	nucleus	53.22	51.11
KXG29128	Sorghum	nucleus	45.62	43.6
TraesCS2A01G122400.1	Wheat	nucleus	11.57	42.94
TraesCS2B01G144600.1	Wheat	nucleus	11.4	42.33
TraesCS5B01G041900.1	Wheat	nucleus	11.24	40.96
TraesCS5A01G040700.1	Wheat	cytosol	11.07	40.36
TraesCS5D01G071700.1	Wheat	nucleus	8.76	30.81
TraesCS5D01G071600.1	Wheat	nucleus	8.76	28.34
TraesCS5B01G067400.1	Wheat	nucleus	8.6	27.81
Zm00001d007635_P004	Maize	nucleus	27.44	23.58
KRH31685	Soybean	nucleus	17.19	10.56
KRH69095	Soybean	nucleus	5.12	10.4

Protein Annotations

EntrezGene:100793801	MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EMBL:ACUP02004116	EnsemblPlantsGene:GLYMA_06G324000	GO:GO:0000243
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008187	GO:GO:0009987	GO:GO:0016607	GO:GO:0030628	GO:GO:0071004
GO:GO:0089701	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7KYQ4	EnsemblPlants:KRH56450	ProteinID:KRH56450
ProteinID:KRH56450.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg
UniParc:UPI0002339467	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:51171154..51176696

Molecular Weight (calculated)

68064.9 Da

IEP (calculated)

7.558

GRAVY (calculated)

-1.087

Length

605 amino acids

Sequence
(BLAST)

001: MADYDERYEG NGEEEELHNS LPHPHPQPDS SPHPTHDDLT DSKSHHGSRD YDRDSSRSRD KEREKGRDRE KKREKGRDRE RDRSRDRDSE RSRDKDRDRE
101: KSKDRERDRD RDRDGGEKER DRDRDRHHRD RHRDRGERRE RTRDRDDDDH HRSRDFDRRR DYDREDRHRH RSRSQSQSRS GGRSEHRSRS RSRSRSKSKR
201: TSGFDMAPPA SAMLAGASAV AGQITGANPT IPGMFPNMFP LATNQMQQFS ALPVMPVQAM TQQATRHARR VYVGGLPPTA NEQSVATFFS QVMAKIGGNT
301: AGPGDAVVNV YINHDKKFAF VEMRSVEEAS NAMALDGIIF EGAPVKVRRP TDYNPSLAAT LGPSQPNPNL NLGAVGLTPG SAGGLDGPDR IFVGGLPYYF
401: TETQIRELLE TFGPLRGFDL VKDRETGNSK GYAFCVYQDL AVTDIACAAL NGIKMGDKTL TVRRANQGAN PQQPKPEQES ILMHAQQQIA LQKLMLQPAL
501: VATKVVCLTH AVSSDELKDD EDYDEILDDM RQECSKFGTL VNVVIPRPPP DGEPAAGVGK VFLEYVDIDG ATKARAGLNG RKFDGNQVVA VFYPENKFAQ
601: GDYEG

Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.