Factsheet for Bra010569.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra010037.1-P
Bra010881.1-P
Bra012098.1-P
Bra017053.1-P
Bra020636.1-P
Bra022568.1-P
Bra030094.1-P
Bra032898.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	Bra010881.1-P	AT1G28360.1	21798944
AT4G36690.1	Bra030094.1-P	AT1G28360.1	21798944
AT4G36690.1	Bra032898.1-P	AT1G28360.1	21798944
AT4G36690.1	Bra000147.1-P	AT2G39760.1	21798944
AT4G36690.1	Bra017053.1-P	AT2G39760.1	21798944
AT4G36690.1	Bra012098.1-P	AT3G50670.1	21798944
AT4G36690.1	Bra010037.1-P	AT5G49400.1	21798944
AT4G36690.1	Bra020636.1-P	AT5G49400.1	21798944
AT4G36690.1	Bra022568.1-P	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24773	Canola	nucleus	100.0	100.0
PGSC0003DMT400040069	Potato	cytosol	45.67	81.35
AT4G36690.1	Thale cress	nucleus	74.19	71.73
HORVU5Hr1G090000.2	Barley	nucleus	50.72	70.78
Bra040973.1-P	Field mustard	nucleus	34.48	70.22
GSMUA_Achr4P16510_001	Banana	nucleus	59.21	69.49
Solyc02g085570.2.1	Tomato	nucleus	67.15	66.67
PGSC0003DMT400033041	Potato	nucleus	65.7	65.47
Bra040940.1-P	Field mustard	nucleus	65.88	64.95
Solyc02g062920.2.1	Tomato	nucleus	65.16	64.46
GSMUA_Achr4P11020_001	Banana	nucleus	65.7	63.19
TraesCS4D01G143400.3	Wheat	nucleus	62.45	63.02
Bra027119.1-P	Field mustard	nucleus	55.6	62.73
HORVU4Hr1G029030.3	Barley	nucleus	62.27	62.73
EES08974	Sorghum	nucleus	61.37	62.39
VIT_13s0139g00410.t01	Wine grape	cytosol	7.58	61.76
TraesCS4A01G171800.3	Wheat	nucleus	62.64	59.72
TraesCSU01G068100.3	Wheat	nucleus	62.27	59.48
Bra031477.1-P	Field mustard	nucleus	63.72	59.43
KRH64800	Soybean	nucleus	64.26	59.33
TraesCS4B01G145600.4	Wheat	nucleus	60.65	59.05
Os11t0636900-02	Rice	nucleus	60.83	58.71
KRH56450	Soybean	nucleus	63.9	58.51
TraesCS4D01G150000.4	Wheat	nucleus	60.29	58.29
TraesCS4A01G165000.4	Wheat	nucleus	60.83	57.61
KXG28995	Sorghum	nucleus	61.55	56.83
PGSC0003DMT400000919	Potato	nucleus	61.91	56.69
Solyc12g008750.1.1	Tomato	nucleus	61.55	56.18
HORVU5Hr1G089980.2	Barley	nucleus, plastid	56.86	55.36
HORVU4Hr1G038850.14	Barley	nucleus	58.84	53.88
TraesCS5D01G375600.1	Wheat	nucleus	56.32	51.06
Bra031341.1-P	Field mustard	nucleus	23.1	51.0
TraesCS5A01G366000.1	Wheat	nucleus	55.78	50.99
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.74	49.8
TraesCS5B01G368400.1	Wheat	nucleus	54.51	47.94
KXG29128	Sorghum	nucleus	46.03	40.28
TraesCS2B01G144600.1	Wheat	nucleus	11.19	38.04
TraesCS2A01G122400.1	Wheat	nucleus	11.19	38.04
TraesCS5B01G041900.1	Wheat	nucleus	11.37	37.95
TraesCS5A01G040700.1	Wheat	cytosol	11.19	37.35
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.75	34.62
TraesCS5D01G071700.1	Wheat	nucleus	9.75	31.4
TraesCS5D01G071600.1	Wheat	nucleus	10.11	29.95
TraesCS5B01G067400.1	Wheat	nucleus	9.93	29.41
Zm00001d007635_P004	Maize	nucleus	26.71	21.02
Bra022941.1-P	Field mustard	nucleus	17.69	7.77

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra010569	EnsemblPlants:Bra010569.1	EnsemblPlants:Bra010569.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742	InterPro:IPR000504
InterPro:IPR012677	UniProt:M4D269	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642
InterPro:U2AF_lg	UniParc:UPI00025461CE	SEG:seg	:	:	:

Description

AT4G36690 (E=5e-187) ATU2AF65A | ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA08:-:15235627..15238905

Molecular Weight (calculated)

61119.4 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.820

Length

554 amino acids

Sequence
(BLAST)

001: MSDFEDHEGN GTAVDVFEAN DNGGRGGEIE DQTDSKSQGE TRDNERESSR SKDREREKGS VDRSRDRSKE RSRDRDRERR SRHRDRSRDR GDRRERGSRD
101: RDDDYRRGSR DRDYDRRRDD RGDRRRHRSR SRSKDRSRRR SRSRSPSKTK RVSGFDMAPP ASAMLAAGAA VTGQVPPPPP TLPPAGMFPN IFPLQTGQAF
201: GGLPMMPIQA MTQQATRHAR RVYVGGLSPV ANEQSVATFF SQVMAAVGGN TAGPGDAVVN VYINHEKKFA FVEMRSVEEA SNAMSLDGII FEGAPVKVRR
301: PSDYNPSLAA SLGPSQPSPH LNLAAVGLTP GASGGLEGPD RIFVGGLPYY FTEAQVRELL ESFGALKGFD LVKDRETGNS KGYAFCVYQD VAVTDIACVA
401: LNGIKMGDKT LTVRRANQGS MQPKPEQESV LLHAQQQIAF QMNMFQPGPV ATTVVCLTQV VTEDELKDDE EFEDIMEDMR QEGGKFGMLT SVVIPRPSPS
501: GEPVPGLGKV FLKYVDTEGS SRARSGMNGR KFGGNEVVAV FYPEDKFDQG EYGA

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.