Factsheet for Zm00001d007635_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006165_P001
Zm00001d006930_P001
Zm00001d007888_P002
Zm00001d010676_P001
Zm00001d012584_P001
Zm00001d014343_P002
Zm00001d022296_P001
Zm00001d031725_P001
Zm00001d038584_P001
Zm00001d043204_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	Zm00001d010676_P001	AT1G28360.1	21798944
AT4G36690.1	Zm00001d012584_P001	AT1G28360.1	21798944
AT4G36690.1	Zm00001d038584_P001	AT1G28360.1	21798944
AT4G36690.1	Zm00001d043204_P001	AT1G28360.1	21798944
AT4G36690.1	Zm00001d007888_P002	AT2G39760.1	21798944
AT4G36690.1	Zm00001d014343_P002	AT3G50670.1	21798944
AT4G36690.1	Zm00001d006930_P001	AT5G49400.1	21798944
AT4G36690.1	Zm00001d022296_P001	AT5G49400.1	21798944
AT4G36690.1	Zm00001d006165_P001	AT5G51910.1	21798944
AT4G36690.1	Zm00001d031725_P001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048777_P007	Maize	nucleus	25.71	30.27
Zm00001d048655_P012	Maize	extracellular, nucleus	22.73	29.68
Zm00001d007632_P003	Maize	nucleus	25.99	29.09
VIT_04s0023g01450.t01	Wine grape	nucleus	22.87	28.5
CDY12868	Canola	mitochondrion	8.95	27.63
KRH64800	Soybean	nucleus	23.44	27.5
KRH56450	Soybean	nucleus	23.58	27.44
Solyc02g085570.2.1	Tomato	nucleus	21.73	27.42
PGSC0003DMT400033041	Potato	nucleus	21.31	26.98
Solyc02g062920.2.1	Tomato	nucleus	21.45	26.96
Bra010569.1-P	Field mustard	nucleus	21.02	26.71
CDY24773	Canola	nucleus	21.02	26.71
CDY35472	Canola	nucleus	20.74	26.55
CDY40481	Canola	nucleus	18.75	25.58
Bra040940.1-P	Field mustard	nucleus	20.31	25.44
CDY66742	Canola	nucleus	20.45	25.4
AT4G36690.1	Thale cress	nucleus	20.6	25.31
CDY03767	Canola	nucleus	21.45	24.88
AT1G60900.1	Thale cress	nucleus	20.74	24.79
CDY12869	Canola	nucleus	17.33	24.6
CDY40493	Canola	nucleus	9.8	24.56
CDY30313	Canola	nucleus	20.45	24.49
CDY67096	Canola	mitochondrion	8.52	24.29
CDX75589	Canola	mitochondrion	12.22	24.23
CDY46188	Canola	nucleus	20.31	24.07
Bra031477.1-P	Field mustard	nucleus	20.31	24.07
Solyc12g008750.1.1	Tomato	nucleus	20.6	23.89
Bra027119.1-P	Field mustard	nucleus	16.62	23.83
PGSC0003DMT400000919	Potato	nucleus	20.45	23.8
PGSC0003DMT400040069	Potato	cytosol	7.95	18.01
CDY55589	Canola	mitochondrion	5.11	14.34
Bra040973.1-P	Field mustard	nucleus	5.54	14.34
Bra031341.1-P	Field mustard	nucleus	4.97	13.94
Bra010656.1-P	Field mustard	mitochondrion, plastid	4.69	13.04
CDY55407	Canola	nucleus	1.99	12.5
AT1G60830.2	Thale cress	nucleus	1.85	11.71
CDY40492	Canola	nucleus	2.41	11.33
Zm00001d048364_P002	Maize	nucleus	9.66	6.97

Protein Annotations

EnsemblPlants:Zm00001d007635_P004	EnsemblPlants:Zm00001d007635_T004	EnsemblPlantsGene:Zm00001d007635	EntrezGene:103648165	InterPro:NAM-associated_C	ncoils:Coil
PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	PFAM:PF14303	ProteinID:ONM27255.1	SEG:seg	UniParc:UPI000221733F
UniProt:A0A1D6F7Q3	MapMan:35.1	:	:	:	:

Description

Splicing factor U2af large subunit B

Coordinates

chr2:+:236671676..236677308

Molecular Weight (calculated)

79571.9 Da

IEP (calculated)

10.042

GRAVY (calculated)

-1.087

Length

704 amino acids

Sequence
(BLAST)

001: MAEYGERYQG NGDQATAEGG YAQTEYAAGA GGSPPSDSNP SVFSDHADGR SSQPQHETQS HDSGSSKSQE RDRERDKGKD RERGRDRVRE KERGRDRDKD
101: RERGDRDRDR DRHHRDRRER SEIREHRDRS DDRDRRRSHD SERRRDRDRD GHRRHRSRSP SKGRDRDRRS SSHSRSRSKS KRVSGFDQAP TQQAVPIVAA
201: GVIPGQLPGV TAPIPGVGVL PNLYNLAAGQ FNPHVIQPQA MTQQATRHAR PVYVGGLPPT ANEQTVAIFF NGVMAAIGGN TAGPGDAVPS QPPLWPRGFI
301: QQHPLDCNMM RNINFSNASY GPTTMWAPIQ TGNISSESTM LPATQSAVYW NHYMNFVRNP LGSVQGNPFP DSFSGTNTST PLQGSNTIPS IPVNLESAAE
401: HSVQDINSPI KTSAPVTKPK KTKEQNYTAA EDLLLCTTWL QISSDPIVHT GQRKKGLWAR IEKRYNEQRG EYPCRMNRAL SSRWDKIRAD VGKFSGCYAR
501: VLREKQSGLT DDDKTSKAAT LFAHEENKPF HFMHCWHKLK GEPKWESICQ GPFRGLHGKA IGSSGGPFIG VEESDSGSAG LTGKRPLCRD SSKSERKKAA
601: SSTTTEYLSR LQELTEKLIQ RIIEKGEKKY KYNEQDMELE KKRLDLEAKK LSIRKRELRL KELSMAEQQL EMLERTREDE VDPEVWSMMK ERKKHLQQFI
701: FSFC

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.