Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d023824_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49400.1 | Zm00001d023824_P002 | AT5G27860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG36793 | Sorghum | nucleus | 94.38 | 93.68 |
| Os11t0199600-02 | Rice | nucleus | 78.28 | 76.56 |
| Zm00001d022296_P001 | Maize | nucleus | 59.55 | 71.62 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 71.16 | 71.16 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 70.41 | 70.41 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 69.66 | 69.92 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 68.16 | 68.42 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 65.54 | 67.05 |
| GSMUA_Achr11P... | Banana | nucleus | 65.92 | 66.42 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 62.55 | 65.75 |
| KRH02335 | Soybean | nucleus | 60.3 | 62.16 |
| KRH50753 | Soybean | nucleus | 59.18 | 61.0 |
| Solyc01g060030.2.1 | Tomato | nucleus | 59.93 | 60.38 |
| VIT_07s0151g01090.t01 | Wine grape | cytosol | 16.1 | 57.33 |
| AT5G49400.1 | Thale cress | nucleus | 56.55 | 54.91 |
| CDX86235 | Canola | nucleus | 57.3 | 54.64 |
| Bra010037.1-P | Field mustard | nucleus | 57.3 | 54.64 |
| CDX85408 | Canola | nucleus | 57.3 | 54.26 |
| Bra020636.1-P | Field mustard | nucleus | 53.18 | 51.45 |
| CDY05631 | Canola | nucleus | 52.43 | 32.26 |
| CDY33903 | Canola | nucleus | 50.56 | 31.32 |
Protein Annotations
| EMBL:BT038095 | EnsemblPlants:Zm00001d006930_P001 | EnsemblPlants:Zm00001d006930_T001 | EnsemblPlantsGene:Zm00001d006930 | EntrezGene:100217191 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | ncoils:Coil | PFAM:PF13917 | ProteinID:ONM25512.1 |
| SEG:seg | UniParc:UPI00017B6B6F | UniProt:B4FLV7 | MapMan:35.2 | : | : |
Description
zinc knuckle (CCHC-type) family protein
Coordinates
chr2:+:219607348..219608151
Molecular Weight (calculated)
30113.7 Da
IEP (calculated)
10.670
GRAVY (calculated)
-1.556
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGNDDKPHA AADRIKAATL SVAKGLSRAQ AERAATAAAR NVNAYGQKEE GPSRWQERKE AKRQMYLMST EKAAKLGTVK PKASETSSVG AYTQCQKCFQ
101: HGHWTYECKN ERVYISRPSR TQQLKNPKLK KSVPVSYQFE NPDIIKEKEE EQKMMKEKQK KEKAERKKGK SKRKHRSPSD SDSSNSAASV FDSDSESSGS
201: EYSSGTSSSY SSSDSEDKKR QHRRKQKKRR HRRDSTSSAS SESESASDSD SDDKSSRRKS RRRGGRR
101: HGHWTYECKN ERVYISRPSR TQQLKNPKLK KSVPVSYQFE NPDIIKEKEE EQKMMKEKQK KEKAERKKGK SKRKHRSPSD SDSSNSAASV FDSDSESSGS
201: EYSSGTSSSY SSSDSEDKKR QHRRKQKKRR HRRDSTSSAS SESESASDSD SDDKSSRRKS RRRGGRR
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.