Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g099930.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49400.1 | Solyc01g099930.2.1 | AT5G27860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0077g01180.t01 | Wine grape | nucleus | 73.21 | 74.33 |
| KRH50753 | Soybean | nucleus | 67.92 | 69.5 |
| KRH02335 | Soybean | nucleus | 67.17 | 68.73 |
| GSMUA_Achr11P... | Banana | nucleus | 68.68 | 68.68 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 65.28 | 68.11 |
| AT5G49400.1 | Thale cress | nucleus | 65.66 | 63.27 |
| Bra010037.1-P | Field mustard | nucleus | 66.04 | 62.5 |
| CDX86235 | Canola | nucleus | 66.04 | 62.5 |
| CDX85408 | Canola | nucleus | 66.42 | 62.41 |
| KXG36793 | Sorghum | nucleus | 62.26 | 61.34 |
| Os11t0199600-02 | Rice | nucleus | 63.02 | 61.17 |
| Bra020636.1-P | Field mustard | nucleus | 63.4 | 60.87 |
| Zm00001d006930_P001 | Maize | nucleus | 60.38 | 59.93 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 60.0 | 59.77 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 60.0 | 59.55 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 59.62 | 59.18 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 58.49 | 58.27 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 56.23 | 57.09 |
| Zm00001d022296_P001 | Maize | nucleus | 43.77 | 52.25 |
| Os07t0640401-00 | Rice | nucleus | 10.19 | 41.54 |
| CDY05631 | Canola | nucleus | 60.75 | 37.1 |
| CDY33903 | Canola | nucleus | 60.0 | 36.89 |
Protein Annotations
| EnsemblPlants:Solyc01g060030.2.1 | EnsemblPlantsGene:Solyc01g060030.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 |
| PFAM:PF13917 | SEG:seg | UniParc:UPI0002762327 | UniProt:K4AWA8 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1:+:69358551..69360345
Molecular Weight (calculated)
29816.2 Da
IEP (calculated)
10.488
GRAVY (calculated)
-1.578
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSKNEESG AQDAAERIKA QALSAAKGLS RAQAERAATA AARNVNAYGQ KEEGPSRWQE RKEAKRQMYL MSTEKQVRLG ERKDKPSGST LGAASQCQKC
101: FQAGHWTYEC KNERVYISRP SRTQQLKNPK LRMKVSASYD LENPDIEKEM KSEKPVKKSK RKHKSDTESG TDSEASVFES GSEASSVTGS DYSSGESDSS
201: DSSSTDSEEE RRRKRKNKKK KKQKKRRHRK YSSTSESSDS YSDSESDSEG RTSRKKSSKR HNKKR
101: FQAGHWTYEC KNERVYISRP SRTQQLKNPK LRMKVSASYD LENPDIEKEM KSEKPVKKSK RKHKSDTESG TDSEASVFES GSEASSVTGS DYSSGESDSS
201: DSSSTDSEEE RRRKRKNKKK KKQKKRRHRK YSSTSESSDS YSDSESDSEG RTSRKKSSKR HNKKR
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.