CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80615
CDY66802

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49400.1	CDX80615	AT5G27860.1	21798944
AT5G49400.1	CDY66802	AT5G27860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020636.1-P	Field mustard	nucleus	60.09	93.84
CDY05631	Canola	nucleus	92.81	92.17
AT5G49400.1	Thale cress	nucleus	42.69	66.91
CDX86235	Canola	nucleus	43.16	66.43
CDX85408	Canola	nucleus	43.16	65.96
VIT_05s0077g01180.t01	Wine grape	nucleus	39.21	64.75
KRH50753	Soybean	nucleus	38.52	64.09
KRH02335	Soybean	nucleus	38.05	63.32
GSMUA_Achr3P24290_001	Banana	nucleus	36.89	62.6
Solyc01g060030.2.1	Tomato	nucleus	36.89	60.0
GSMUA_Achr11P...	Banana	nucleus	35.96	58.49
Os11t0199600-02	Rice	nucleus	33.18	52.38
TraesCS7A01G422700.1	Wheat	nucleus	32.02	51.69
TraesCS7D01G415100.1	Wheat	nucleus	31.79	51.5
HORVU7Hr1G097780.1	Barley	nucleus	31.55	51.13
Zm00001d006930_P001	Maize	nucleus	31.32	50.56
TraesCS7B01G323100.1	Wheat	nucleus	31.32	50.56
KXG36793	Sorghum	nucleus	30.86	49.44
TraesCS5A01G022300.1	Wheat	nucleus	29.23	48.28
Zm00001d022296_P001	Maize	nucleus	24.59	47.75
Os07t0640401-00	Rice	nucleus	6.5	43.08

Protein Annotations

EnsemblPlants:CDY33903	EnsemblPlantsGene:GSBRNA2T00055410001	GO:A0A078HAN7	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:Znf_CCHC_sf	PANTHER:PTHR35110	PANTHER:PTHR35110:SF1	PFAM:PF13917	ProteinID:CDY33903
ProteinID:CDY33903.1	SEG:seg	SUPFAM:SSF57756	UniParc:UPI0004EEF570	UniProt:A0A078HAN7	MapMan:35.2

Description

BnaA02g30840DBnaA02g30840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAN7]

Coordinates

chrLK032324:+:172397..175216

Molecular Weight (calculated)

48428.1 Da

IEP (calculated)

10.785

GRAVY (calculated)

-1.032

Length

431 amino acids

Sequence
(BLAST)

001: MSDAKEEKSQ VAADRIKAAA LTAAKGLSRT QAERAATAAA RNVNAYGQKE EGPSRWQEKR EAKRQMYLMS TEKAVRLGER KDNKSVSASA VVGGGGSQCQ
101: KCFQTGHWTY ECKNERVYVS RPSRTQQLKN PKLRTKPSVD DLDGGGDDGK IEVANGKGEG ERRAKRKQRS KSDSGSDSEA SVFESSDGSE SSGESDSEYS
201: SSSESEEERR RRRSKRTSKK KKPKQRKERR RRRRYSSCSS SSEEESSDSE SVVTFAWLLQ RVQALSQVSV SRNSAASAST FSPSSAKYLS MLRNVVPWNI
301: SNQNVVGLLI RQFATKPKPK MKPIELNTPP EQTQTITRVI FDVLKEHGPL TIAETWDRVK EVGLRGLTSK RHMKIILRWM RERQKLKLIC NHVGPHKQFL
401: YTTWFTKHNP SKFSKPPENL TGKSSGHPKL P

Best Arabidopsis Sequence Match ( AT5G49410.1 )
(BLAST)

001: MLRNMMMPWN SSDHNVVGML TRHFATKPKP KMKPIELNTP PEQTQTITRV IFDILKDHGP LTIAETWDRV KEVGLRGLTS KRHMKIILRW MRERQKLKLI
101: CNHVGPHKQF LYTTWFTKHN PSSKFPKLPP ENLTGKSSGH PPKLP

Arabidopsis Description

At5g49410 [Source:UniProtKB/TrEMBL;Acc:Q9FGX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.