Factsheet for HORVU7Hr1G097780.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G023980.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49400.1	HORVU5Hr1G023980.1	AT5G27860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G323100.1	Wheat	nucleus	95.11	94.76
TraesCS7D01G415100.1	Wheat	nucleus	94.74	94.74
TraesCS7A01G422700.1	Wheat	nucleus	93.98	93.63
Os11t0199600-02	Rice	nucleus	71.43	69.6
KXG36793	Sorghum	nucleus	69.55	68.77
Zm00001d006930_P001	Maize	nucleus	68.42	68.16
GSMUA_Achr11P...	Banana	nucleus	60.15	60.38
Zm00001d022296_P001	Maize	nucleus	50.0	59.91
GSMUA_Achr3P24290_001	Banana	nucleus	56.77	59.45
Solyc01g060030.2.1	Tomato	nucleus	58.27	58.49
KRH02335	Soybean	nucleus	56.77	58.3
KRH50753	Soybean	nucleus	55.64	57.14
VIT_07s0151g01090.t01	Wine grape	cytosol	15.41	54.67
AT5G49400.1	Thale cress	nucleus	53.76	52.0
Bra020636.1-P	Field mustard	nucleus	53.01	51.09
CDX86235	Canola	nucleus	53.76	51.07
Bra010037.1-P	Field mustard	nucleus	53.76	51.07
CDX85408	Canola	nucleus	53.38	50.35
Os07t0640401-00	Rice	nucleus	10.9	44.62
CDY33903	Canola	nucleus	51.13	31.55
CDY05631	Canola	nucleus	50.75	31.11

Protein Annotations

EMBL:AK358102	EMBL:AK366820	EMBL:AK368054	EnsemblPlants:HORVU7Hr1G097780.1	EnsemblPlantsGene:HORVU7Hr1G097780	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	InterPro:Znf_CCHC_sf	ncoils:Coil	PANTHER:PTHR13491
PFAM:PF13917	SEG:seg	SUPFAM:SSF57756	UniParc:UPI0002005195	UniProt:F2D2J5	MapMan:35.2

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D2J5]

Coordinates

chrchr7H:-:593306761..593308199

Molecular Weight (calculated)

29881.4 Da

IEP (calculated)

10.712

GRAVY (calculated)

-1.581

Length

266 amino acids

Sequence
(BLAST)

001: MSGNDSQAAA DRIKAQALSN AKGLSRAQAE RAAEAAARNV NAYGQKEEGP SRWQERKEAK RQMYLMSTEK AVRLGVRPNA EPASATAGGQ CQKCFQPGHW
101: TYECKNERVY ISRPSRTDQL KDPRLKKAWL PAPSQFVNPD LEKEMEEERK LTREKLKKEK SQKRKARSKS KSKRKHRAPV SDSDSDSESS GTGSEYSSES
201: GSSSYSSSDS EDKKKRRSKT KQKKRRHRRD TSSSSSGSES ESESDSDSDG KGSRRKSKKR VDKHRS

Best Arabidopsis Sequence Match ( AT5G49400.1 )
(BLAST)

001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR

Arabidopsis Description

At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.