Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os12t0516700-01 | |
| Os12t0554000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49400.1 | Os12t0516700-01 | AT5G27860.1 | 21798944 |
| AT5G49400.1 | Os12t0554000-01 | AT5G27860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG36793 | Sorghum | nucleus | 77.66 | 78.81 |
| Zm00001d006930_P001 | Maize | nucleus | 76.56 | 78.28 |
| TraesCS7B01G323100.1 | Wheat | nucleus | 71.43 | 73.03 |
| TraesCS7D01G415100.1 | Wheat | nucleus | 71.06 | 72.93 |
| TraesCS7A01G422700.1 | Wheat | nucleus | 70.7 | 72.28 |
| HORVU7Hr1G097780.1 | Barley | nucleus | 69.6 | 71.43 |
| GSMUA_Achr3P24290_001 | Banana | nucleus | 63.0 | 67.72 |
| TraesCS5A01G022300.1 | Wheat | nucleus | 63.74 | 66.67 |
| GSMUA_Achr11P... | Banana | nucleus | 64.47 | 66.42 |
| KRH02335 | Soybean | nucleus | 60.81 | 64.09 |
| KRH50753 | Soybean | nucleus | 60.81 | 64.09 |
| Solyc01g060030.2.1 | Tomato | nucleus | 61.17 | 63.02 |
| VIT_07s0151g01090.t01 | Wine grape | cytosol | 15.75 | 57.33 |
| AT5G49400.1 | Thale cress | nucleus | 57.51 | 57.09 |
| CDX85408 | Canola | nucleus | 58.24 | 56.38 |
| CDX86235 | Canola | nucleus | 56.78 | 55.36 |
| Bra010037.1-P | Field mustard | nucleus | 56.78 | 55.36 |
| Bra020636.1-P | Field mustard | nucleus | 55.68 | 55.07 |
| Os07t0640401-00 | Rice | nucleus | 11.72 | 49.23 |
| CDY05631 | Canola | nucleus | 53.48 | 33.64 |
| CDY33903 | Canola | nucleus | 52.38 | 33.18 |
Protein Annotations
| EMBL:AK120040 | EnsemblPlants:Os11t0199600-02 | EnsemblPlantsGene:Os11g0199600 | EntrezGene:4350003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:Znf_CCHC_sf | ncoils:Coil | PFAM:PF13917 | ProteinID:AAX96739.1 |
| ProteinID:ABA91943.1 | ProteinID:BAF27800.1 | ProteinID:BAT13068.1 | ProteinID:EAZ17737.1 | RefSeq:XP_015615170.1 | SEG:seg |
| SUPFAM:SSF57756 | UniParc:UPI00005094F4 | UniProt:Q53LQ3 | MapMan:35.2 | : | : |
Description
Zinc finger, CCHC-type domain containing protein. (Os11t0199600-02)
Coordinates
chr11:-:4991002..4992888
Molecular Weight (calculated)
30570.2 Da
IEP (calculated)
10.662
GRAVY (calculated)
-1.488
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGNDDKSQA AAERIKAQAL SAAKGLSRTQ AERAAAAAAR NVNAYGQKEE GPSRWQERKE AKRQMYLMST EKAVILGVKP KAAQTSSSSG GAYTQCQKCF
101: QPGHWTYECK NERVYISRPS RTQQLKNPKL KKTAAPVSYQ FQNPDLEKEK EEERKLMKAK LKKEKSEKSK RKSKRKYRSR SDSDSSEASV FDSDSESSVT
201: GSEYSSGSSS SYSSSDSEDK KRRPKRKQQK RRHRRETSSS ASSESDSESA SASDSDSDDK GSRKKSRKRS ARR
101: QPGHWTYECK NERVYISRPS RTQQLKNPKL KKTAAPVSYQ FQNPDLEKEK EEERKLMKAK LKKEKSEKSK RKSKRKYRSR SDSDSSEASV FDSDSESSVT
201: GSEYSSGSSS SYSSSDSEDK KRRPKRKQQK RRHRRETSSS ASSESDSESA SASDSDSDDK GSRKKSRKRS ARR
001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR
Arabidopsis Description
At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.