Factsheet for TraesCS5A01G022300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G091500.1
TraesCS5B01G098000.1
TraesCS5D01G103600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49400.1	TraesCS5A01G091500.1	AT5G27860.1	21798944
AT5G49400.1	TraesCS5B01G098000.1	AT5G27860.1	21798944
AT5G49400.1	TraesCS5D01G103600.1	AT5G27860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G422700.1	Wheat	nucleus	75.86	74.16
Zm00001d006930_P001	Maize	nucleus	67.05	65.54
KXG36793	Sorghum	nucleus	66.67	64.68
Os11t0199600-02	Rice	nucleus	66.67	63.74
GSMUA_Achr3P24290_001	Banana	nucleus	55.56	57.09
GSMUA_Achr11P...	Banana	nucleus	57.85	56.98
Solyc01g060030.2.1	Tomato	nucleus	57.09	56.23
Zm00001d022296_P001	Maize	nucleus	47.51	55.86
KRH02335	Soybean	nucleus	54.79	55.21
KRH50753	Soybean	nucleus	54.79	55.21
VIT_07s0151g01090.t01	Wine grape	cytosol	15.33	53.33
AT5G49400.1	Thale cress	nucleus	53.26	50.55
CDX86235	Canola	nucleus	51.72	48.21
Bra010037.1-P	Field mustard	nucleus	51.72	48.21
Bra020636.1-P	Field mustard	nucleus	50.57	47.83
CDX85408	Canola	nucleus	51.34	47.52
Os07t0640401-00	Rice	nucleus	10.34	41.54
CDY05631	Canola	nucleus	49.81	29.95
CDY33903	Canola	nucleus	48.28	29.23

Protein Annotations

EnsemblPlants:TraesCS5A01G022300.1	EnsemblPlantsGene:TraesCS5A01G022300	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008270
InterPro:Znf_CCHC_sf	ncoils:Coil	PANTHER:PTHR13491	PFAM:PF13917	SEG:seg	SUPFAM:SSF57756
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:18389036..18389821

Molecular Weight (calculated)

29490.1 Da

IEP (calculated)

10.781

GRAVY (calculated)

-1.515

Length

261 amino acids

Sequence
(BLAST)

001: MSGNNSQAVA DRIKAQALSN AKGLSRAQAE RAAEAAARNV NAYGQKEEGP SHWQERKEAK RKMYLMSTEQ PVRLGVRRNA VPTSSAGGQC QKCFQPGHWT
101: YECKNERVYI SRPSRTEQLK NPRLKKKVSL PARSRFVNPD LEKEMEEERK LTGEKQKEKS ERREVKSKRK HRASVSDTDS DSKSSSSGSE YSSESGSSSY
201: SPLDSEDRKH RCNAKQKKRR HRRDSTSSSS SSLSKSESEP DSDNNGSNKR KSKKRGYTRR A

Best Arabidopsis Sequence Match ( AT5G49400.1 )
(BLAST)

001: MSNSKDEKSQ DAADRIKAAT LTAAKGLSRT QAERAAAAAA RNVNAYGQKE EGPSRWQEKR ELKRQMYLMS TEKAVRLGER KDKTMSASAV GSSASAASQC
101: QKCFQAGHWT YECKNERVYI SRPSRTQQLK NPKLRTKPSV DDLDGSDDDD EEERPDATNG KAEVEKRSKK SKRKHRSKSD SESDSEASVF ETDSDGSSGE
201: SSSEYSSSSD SEDERRRRRK AKKSKKKQKQ RKERRRRYSS SSSESSESES ASDSDSDEDR SRRKKKSKRH SNKRR

Arabidopsis Description

At5g49400 [Source:UniProtKB/TrEMBL;Acc:Q6NMK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.