CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80615
CDY66802

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49400.1	CDX80615	AT5G27860.1	21798944
AT5G49400.1	CDY66802	AT5G27860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33903	Canola	nucleus	92.17	92.81
Bra020636.1-P	Field mustard	nucleus	54.61	85.87
AT5G49400.1	Thale cress	nucleus	44.7	70.55
CDX85408	Canola	nucleus	45.62	70.21
CDX86235	Canola	nucleus	43.55	67.5
VIT_05s0077g01180.t01	Wine grape	nucleus	40.09	66.67
KRH50753	Soybean	nucleus	38.94	65.25
KRH02335	Soybean	nucleus	38.71	64.86
GSMUA_Achr3P24290_001	Banana	nucleus	37.79	64.57
Solyc01g060030.2.1	Tomato	nucleus	37.1	60.75
GSMUA_Achr11P...	Banana	nucleus	36.41	59.62
Os11t0199600-02	Rice	nucleus	33.64	53.48
Zm00001d006930_P001	Maize	nucleus	32.26	52.43
TraesCS7A01G422700.1	Wheat	nucleus	31.57	51.31
KXG36793	Sorghum	nucleus	31.8	51.3
TraesCS7D01G415100.1	Wheat	nucleus	31.34	51.13
HORVU7Hr1G097780.1	Barley	nucleus	31.11	50.75
TraesCS7B01G323100.1	Wheat	nucleus	30.88	50.19
TraesCS5A01G022300.1	Wheat	nucleus	29.95	49.81
Zm00001d022296_P001	Maize	nucleus	25.12	49.1
Os07t0640401-00	Rice	nucleus	6.22	41.54

Protein Annotations

EnsemblPlants:CDY05631	EnsemblPlantsGene:GSBRNA2T00120609001	GO:A0A078EWN5	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:Znf_CCHC_sf	PANTHER:PTHR35110	PANTHER:PTHR35110:SF1	PFAM:PF13917	ProteinID:CDY05631
ProteinID:CDY05631.1	SEG:seg	SUPFAM:SSF57756	UniParc:UPI0004EF1221	MapMan:35.2	:

Description

BnaC02g39060D

Coordinates

chrLK031963:-:346373..349087

Molecular Weight (calculated)

48955.9 Da

IEP (calculated)

10.834

GRAVY (calculated)

-0.999

Length

434 amino acids

Sequence
(BLAST)

001: MSDAKEEKAQ VAADRIKAAA LTAAKGLSRT QAERAATAAA RNVNAYGQKE EGPSRWQEKR EAKRQMYLMS TEKAVRLGER KDNKSVSASA VVGGGGSQCQ
101: KCFQTGHWTY ECKNERVYVS RPSRTQQLKN PKLRTKPSVD DLDGDDEKVE VANGKGEGER RSKRKHRSKS DSGSDSEASV FESSDGSESS GESDSEYSSS
201: SESEEERRRR RSKRTSKKKK PKQRKERRRR RRYSSSSSSS EEESSDSESV VTFAWLLQRV QALSLVSISR KSAASASTLS PSVLVFIAAK YLSMLRNVMP
301: WNRSNHNVAG LLIRQFATKP KPKMKPIELN TPPEQTQTIT RVIFDVLKEH GPLTIAETWD RVKEVGLRGL TSKRHMKIIL RWMRERQKLK LICNHVGPHK
401: QFLYTTWFTK HNPSKFSKPP ENLTGKSSGH PKLP

Best Arabidopsis Sequence Match ( AT5G49410.1 )
(BLAST)

001: MLRNMMMPWN SSDHNVVGML TRHFATKPKP KMKPIELNTP PEQTQTITRV IFDILKDHGP LTIAETWDRV KEVGLRGLTS KRHMKIILRW MRERQKLKLI
101: CNHVGPHKQF LYTTWFTKHN PSSKFPKLPP ENLTGKSSGH PPKLP

Arabidopsis Description

At5g49410 [Source:UniProtKB/TrEMBL;Acc:Q9FGX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.